MXO01368.3prime Sequence
852 bp (772 high quality bases) assembled on 2007-03-15
> MXO01368.3prime
ATGGTCTAGAAAGCTTGCAGGTATCAAATTGAGCAGGTTGTCCAGAGCGG
CGGAGCTGGCAAAGAGATCAGTAGTTATGGCGTCATAGTCTACGCCCAGG
CTCTCCAGCTCGGTGAAACAGTCTTCCGTGAGGCCTGGAATCTCCAGTGA
GTTAATCGACTTGTTGAATGCATCATGCCGATTGGTGTAGCCCTTCTTCT
CGCGGAACATCTCAGCCAACTGCTCGTCGCTCAGTTCGATGCCATGCACC
TTCTTGGAATGTTGGCGGAATTTGCTGCGATCAGCGAACTCGCTGGTGCA
CTTCTGGCACTTGTACGGGTAATCCATGTGCTCGTACTGATGCTGACGCC
TGCGCCATCTGGTCTTCGTCTCAAAGTTGCACTCCTCCCAGCGCCAGACC
TTCGACTTCTGGTGACTTCTTTGCTCGTGCTCGCGCAGCAGGGTCATGTT
TTGGAACTGATTGCCACAGGTAAGGCAGCTAACTGGTTCCTCATTGACAT
GAGCCCGTTCGTAGTGCACTCGCAACTCCGCCGAGTTAACATAGTTAAGC
GAGCACTTACCGCACTGGTAGTGCCGCTCCGAGTGCCGCTTGCGATGCAT
CGTTAGGGTTTCGGCGCTTTTGAAGCTACGCCGGCAGATCTCGCACTCGT
GTACTGTTTCCACGGCATGGAGTTGCTGCAAGTGTAGCTCGTACTTGCGC
ATGCTGTTGAACTGTTGATCGCAGAAGCTGCAATGCACGACATCCTTCAC
CTGACAGAAACGCTGATGGCTGTGCAGGCTGGCCTTCTGGTTGAACACCT
TATCGCATGCCGTGCAGGCATATGATTCTGTTGGTGACACCGCAATTTGC
AC
MXO01368.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12942-PA | 2061 | CG12942-RA | 1225..2058 | 852..19 | 4120 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12942-RA | 2481 | CG12942-RA | 1369..2202 | 852..19 | 4140 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10896056..10896636 | 852..272 | 2875 | 99.7 | Minus |
| 2R | 25286936 | 2R | 10896691..10896943 | 271..19 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:35 has no hits.
MXO01368.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:55 Download gff for
MXO01368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-PA | 1225..2061 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:56 Download gff for
MXO01368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-RA | 1369..2205 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:40 Download gff for
MXO01368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-RA | 1369..2205 | 15..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:40 Download gff for
MXO01368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10896691..10896946 | 15..271 | 99 | | Minus |
| 2R | 10896056..10896636 | 272..852 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:56 Download gff for
MXO01368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6783561..6784141 | 272..852 | 99 | -> | Minus |
| arm_2R | 6784196..6784451 | 15..271 | 99 | | Minus |
MXO01368.5prime Sequence
669 bp (622 high quality bases) assembled on 2007-03-15
> MXO01368.5prime
CAGTCGACATGGACGCCGCCGTACCGGATCCCGCGCTCCTGGCGATGAAC
AAGCTGAACAAGGGCTCCAAGTGCCGAGCCTGTCTATCGGTGGACAGGAA
AACCGTGCAGTTGAACGCCGAGGTGCCCAACCTGCAAAAGACGCGTACCT
ACGCCCAGAGCCTGAAGCAGTGCACCAACCTGGACCTGCGGGTCATTAGT
CCAGGTGGCTACCTGTGGCCGATGCAAATCTGCGTGCGCTGCTGTCGCGC
CCTGGAGGTGGCTATGCACTTTGTCGAAATGGCCCTGGAATCGAATCTCA
AGCTCCAAGCCGAAGCCAAAAGCGTAAAGCTGCCCAGTCCCACTGGAGAG
CTTAAACGAAAGGCCAGCAACGAAACGATACCTTGTTTTCCCCCCCCCCA
GGAGTTCGAGCAGTTTGTCAAGGGCTATGAGGGTCCCATCGAGGAGAATG
TCCTCTATATGCGAGGAACCAAGGTGCCGCGGCTGGATGTCGACGCTTCT
TCGAGCAGCGAGACAGCGCCAAAGGAAGATGAAGTAATACTCTTCGACGT
CAAGTATGACACCAATGATCTGGAGGAGGAGGACGAGAACGACGGCTCGG
ATGCCAAGAACAATGAGACCTTCTTCGAGAACAGTATTACACCTGGAGAG
TCAGTTATGGTCGTCTCAG
MXO01368.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12942-PA | 2061 | CG12942-RA | 1..374 | 9..382 | 1870 | 100 | Plus |
| CG12942-PA | 2061 | CG12942-RA | 390..661 | 398..669 | 1335 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12942-RA | 2481 | CG12942-RA | 144..805 | 8..669 | 3130 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10894602..10895128 | 8..534 | 2455 | 97.7 | Plus |
| 2R | 25286936 | 2R | 10895190..10895327 | 532..669 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:54 has no hits.
MXO01368.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:55 Download gff for
MXO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-PA | 1..661 | 9..669 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:49 Download gff for
MXO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-RA | 138..805 | 1..669 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:53 Download gff for
MXO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-RA | 138..805 | 1..669 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:53 Download gff for
MXO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10894596..10895128 | 1..534 | 97 | -> | Plus |
| 2R | 10895193..10895327 | 535..669 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:49 Download gff for
MXO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6782101..6782633 | 1..534 | 97 | -> | Plus |
| arm_2R | 6782698..6782832 | 535..669 | 100 | | Plus |
