MXO01371.3prime Sequence
832 bp (777 high quality bases) assembled on 2007-03-15
> MXO01371.3prime
ATGGTCTAGAAAGCTTGCGATGACGCGGTTGACCAGCGGCATCTTGCGCC
TGTTGTAGGTGGGCGGATGCTGCTGCGGCTGTATGACTTGCTGCACCTTC
ACTTTCTGGCCGTATTGCTGTTCCAACTCGCCAGCAGGACCAATTGCATA
GTTAATGTCGACGCGAGCCCGTTTCAATGCCGGCTGCTGGTTGTAGCCAT
CGGTGGCATTCAGATCGGCAGGGTTCAACTCAATGATGTGCTGGTCATTC
GAGATAATTCGACGCACTGACTCCTTATCATCCTCTATGTCGATTGCGTC
GTATAGATCCCCGACCTCTATATCGAAGTCGTTACTTTTCTGACCAAGTA
GTGGATGGTTGATGGGTAGGTTGTTTGCCTGGTTTCCCTTGGCATGACGC
TCATCTTCCGCATCAAAATCGTTGATTATTTGCTCATCATCATCCCCGTC
CTCCTCCTCGTCTTCCTCTTCTACCAGCATTGCATCCACCATAGTGTCCT
CGAATTCGTGTTCCTCCAGATCCGAAGACTCCTCAATTTCCGATTGCGAG
TCCAGCTCTACATCCGAGTCTGCCGATCCGTGCTTCATCTCTCCCCTTTC
CAGGGACTCCAGATGCTGAGGATATACCATGGCTCCACGTATGGCAGCCG
GATCCTTGCGCGACCACTTTTGCACCTCCTCGTCCATCTTGTTGATACGA
TCGGGATTCATGGCCCAACGGCAGCCCTTTCTCTGGTTGCCATTCGTCGC
TGGTCTTTCGATCTTCTCAAAGCATTTGTTTAAAGACAGGTTGTGACGCA
CACTGTTCTTCCACCGCTGGGGGCATTCTCGA
MXO01371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4029-PA | 2160 | jumu-RA | 1363..2157 | 813..19 | 3950 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jumu-RA | 3860 | CG4029-RA | 1689..2503 | 832..19 | 4035 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10359381..10359900 | 832..314 | 2535 | 99.6 | Minus |
3R | 32079331 | 3R | 10359957..10360255 | 317..19 | 1495 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader5 | 4038 | invader5 INVADER5 4038bp | 1254..1301 | 522..569 | 114 | 70.8 | Plus |
MXO01371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:57 Download gff for
MXO01371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4029-PA | 1344..2160 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:07 Download gff for
MXO01371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jumu-RA | 1690..2509 | 13..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:38 Download gff for
MXO01371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jumu-RA | 1690..2509 | 13..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:38 Download gff for
MXO01371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10359382..10359898 | 316..831 | 99 | -> | Minus |
3R | 10359959..10360261 | 13..315 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:07 Download gff for
MXO01371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6185104..6185620 | 316..831 | 99 | -> | Minus |
arm_3R | 6185681..6185983 | 13..315 | 99 | | Minus |
MXO01371.5prime Sequence
684 bp (352 high quality bases) assembled on 2007-03-15
> MXO01371.5prime
CAATCGACATGTTCGAACTATAGGATCCTTCGAGCGGCATACATGAGGGA
TTCTTCATCAAATATGCGGATGCGGCTGGACCCTCGCTAGACTTTTATGT
ATCCGACTCGATGCAGGAGATGCTGAACGTGGACATCCGCGCAGAGATCG
CCAATGTGGTGGGCAGTTCCAGCAGCGACTTGACCTCGTCCCTGGACCAA
ACACTGGAAGCTATATCCGCGATAAACAACAACCAAAGCAATGGAAACAG
CAGCCAGTCAGCTTCTTACAATGCGAATGCGAATTTTCTGACCAGCAGCG
GACTCCACGCCTCACCCACAGCGAAAGGGATGGGCTCGTCGGCCAATTTT
TGGTCCAACAGCGATTACTATGCGGATCTGGGGTCTTGTGCCCCCCCCAT
TTCCGTAATGCCACTGATAAATTAAACTTCTGCAGGAATGTTCTCGCCAA
AAAAAAACAAGACAGCCTCAAGTACGCAGGGAAGATCGGGAGCGGTGCCC
TCGTCGCCCAGCGCCGAAAGGGATCAGCACAAATCGCACCTGACATTTTC
GCCGGCTCAGATGAAGGTCAGTGCAGGATCCATGCGGCGGGACCAGGTGA
TGGCACACATTCCCAAGCAAATATCCGTGGTCACGGGCACCGGAACCACA
CCGCCCGCCACAATGGCCACCAATTCGGTGCTTC
MXO01371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4029-PA | 2160 | jumu-RA | 1..375 | 9..383 | 1725 | 98.4 | Plus |
CG4029-PA | 2160 | jumu-RA | 387..676 | 395..684 | 1375 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jumu-RA | 3860 | CG4029-RA | 345..1022 | 7..684 | 3165 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10358098..10358714 | 68..684 | 2920 | 98.2 | Plus |
3R | 32079331 | 3R | 10350526..10350588 | 7..69 | 255 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:54 has no hits.
MXO01371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:57 Download gff for
MXO01371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4029-PA | 1..676 | 9..684 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:50 Download gff for
MXO01371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jumu-RA | 339..1022 | 1..684 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:16 Download gff for
MXO01371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jumu-RA | 339..1022 | 1..684 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:16 Download gff for
MXO01371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10358099..10358714 | 69..684 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:50 Download gff for
MXO01371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6183821..6184436 | 69..684 | 98 | | Plus |