Clone MXO01371 Report

Search the DGRC for MXO01371

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:71
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptjumu-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01371.3prime Sequence

832 bp (777 high quality bases) assembled on 2007-03-15

> MXO01371.3prime
ATGGTCTAGAAAGCTTGCGATGACGCGGTTGACCAGCGGCATCTTGCGCC
TGTTGTAGGTGGGCGGATGCTGCTGCGGCTGTATGACTTGCTGCACCTTC
ACTTTCTGGCCGTATTGCTGTTCCAACTCGCCAGCAGGACCAATTGCATA
GTTAATGTCGACGCGAGCCCGTTTCAATGCCGGCTGCTGGTTGTAGCCAT
CGGTGGCATTCAGATCGGCAGGGTTCAACTCAATGATGTGCTGGTCATTC
GAGATAATTCGACGCACTGACTCCTTATCATCCTCTATGTCGATTGCGTC
GTATAGATCCCCGACCTCTATATCGAAGTCGTTACTTTTCTGACCAAGTA
GTGGATGGTTGATGGGTAGGTTGTTTGCCTGGTTTCCCTTGGCATGACGC
TCATCTTCCGCATCAAAATCGTTGATTATTTGCTCATCATCATCCCCGTC
CTCCTCCTCGTCTTCCTCTTCTACCAGCATTGCATCCACCATAGTGTCCT
CGAATTCGTGTTCCTCCAGATCCGAAGACTCCTCAATTTCCGATTGCGAG
TCCAGCTCTACATCCGAGTCTGCCGATCCGTGCTTCATCTCTCCCCTTTC
CAGGGACTCCAGATGCTGAGGATATACCATGGCTCCACGTATGGCAGCCG
GATCCTTGCGCGACCACTTTTGCACCTCCTCGTCCATCTTGTTGATACGA
TCGGGATTCATGGCCCAACGGCAGCCCTTTCTCTGGTTGCCATTCGTCGC
TGGTCTTTCGATCTTCTCAAAGCATTTGTTTAAAGACAGGTTGTGACGCA
CACTGTTCTTCCACCGCTGGGGGCATTCTCGA

MXO01371.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4029-PA 2160 jumu-RA 1363..2157 813..19 3950 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
jumu-RA 3860 CG4029-RA 1689..2503 832..19 4035 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10359381..10359900 832..314 2535 99.6 Minus
3R 32079331 3R 10359957..10360255 317..19 1495 100 Minus
Blast to na_te.dros performed 2014-11-28 23:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
invader5 4038 invader5 INVADER5 4038bp 1254..1301 522..569 114 70.8 Plus

MXO01371.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:57 Download gff for MXO01371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4029-PA 1344..2160 18..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:07 Download gff for MXO01371.3prime
Subject Subject Range Query Range Percent Splice Strand
jumu-RA 1690..2509 13..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:38 Download gff for MXO01371.3prime
Subject Subject Range Query Range Percent Splice Strand
jumu-RA 1690..2509 13..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:38 Download gff for MXO01371.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10359382..10359898 316..831 99 -> Minus
3R 10359959..10360261 13..315 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:07 Download gff for MXO01371.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6185104..6185620 316..831 99 -> Minus
arm_3R 6185681..6185983 13..315 99   Minus

MXO01371.5prime Sequence

684 bp (352 high quality bases) assembled on 2007-03-15

> MXO01371.5prime
CAATCGACATGTTCGAACTATAGGATCCTTCGAGCGGCATACATGAGGGA
TTCTTCATCAAATATGCGGATGCGGCTGGACCCTCGCTAGACTTTTATGT
ATCCGACTCGATGCAGGAGATGCTGAACGTGGACATCCGCGCAGAGATCG
CCAATGTGGTGGGCAGTTCCAGCAGCGACTTGACCTCGTCCCTGGACCAA
ACACTGGAAGCTATATCCGCGATAAACAACAACCAAAGCAATGGAAACAG
CAGCCAGTCAGCTTCTTACAATGCGAATGCGAATTTTCTGACCAGCAGCG
GACTCCACGCCTCACCCACAGCGAAAGGGATGGGCTCGTCGGCCAATTTT
TGGTCCAACAGCGATTACTATGCGGATCTGGGGTCTTGTGCCCCCCCCAT
TTCCGTAATGCCACTGATAAATTAAACTTCTGCAGGAATGTTCTCGCCAA
AAAAAAACAAGACAGCCTCAAGTACGCAGGGAAGATCGGGAGCGGTGCCC
TCGTCGCCCAGCGCCGAAAGGGATCAGCACAAATCGCACCTGACATTTTC
GCCGGCTCAGATGAAGGTCAGTGCAGGATCCATGCGGCGGGACCAGGTGA
TGGCACACATTCCCAAGCAAATATCCGTGGTCACGGGCACCGGAACCACA
CCGCCCGCCACAATGGCCACCAATTCGGTGCTTC

MXO01371.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4029-PA 2160 jumu-RA 1..375 9..383 1725 98.4 Plus
CG4029-PA 2160 jumu-RA 387..676 395..684 1375 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
jumu-RA 3860 CG4029-RA 345..1022 7..684 3165 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10358098..10358714 68..684 2920 98.2 Plus
3R 32079331 3R 10350526..10350588 7..69 255 93.7 Plus
Blast to na_te.dros performed on 2014-11-28 22:02:54 has no hits.

MXO01371.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:57 Download gff for MXO01371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4029-PA 1..676 9..684 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:50 Download gff for MXO01371.5prime
Subject Subject Range Query Range Percent Splice Strand
jumu-RA 339..1022 1..684 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:16 Download gff for MXO01371.5prime
Subject Subject Range Query Range Percent Splice Strand
jumu-RA 339..1022 1..684 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:16 Download gff for MXO01371.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10358099..10358714 69..684 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:50 Download gff for MXO01371.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6183821..6184436 69..684 98   Plus