MXO01372.3prime Sequence
260 bp (259 high quality bases) assembled on 2007-03-15
> MXO01372.3prime
ATGGTCTAGAAAGCTTGCGATGAGCGCATCGGTGTAAACCTCCTCCTCGT
TGACGACAAAGTCGCCGAACACCTCCTCCTGACAGCCCACGTCCATGTCG
CCGAAGTCCTCGTAGTACATGTCAGAGTCTAGCAGGATCTGTTCCTCCTG
CAGCCCGAGAATGGGATAGCCCGGATTGGTGAGAGCGTCCTCTGCTGCCA
GCACTTCCGTTTTCACCTCCGCCGGCTCCTCTGGTTCATCTTGTTCCTCC
TCCTCATCCG
MXO01372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-PA | 2211 | CG12299-RA | 1967..2208 | 260..19 | 1210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-RA | 3310 | CG12299-RA | 2402..2643 | 260..19 | 1210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10739854..10740095 | 260..19 | 1210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:26 has no hits.
MXO01372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:58 Download gff for
MXO01372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-PA | 1967..2211 | 18..260 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:36 Download gff for
MXO01372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 2402..2643 | 19..260 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:31 Download gff for
MXO01372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 2402..2643 | 19..260 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:31 Download gff for
MXO01372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10739854..10740095 | 19..260 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:36 Download gff for
MXO01372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10739854..10740095 | 19..260 | 100 | | Minus |
MXO01372.5prime Sequence
836 bp (668 high quality bases) assembled on 2007-03-15
> MXO01372.5prime
CAGTCGACATGGCCGTGCAGCTGAAACAGAGCTACCACCACCTGCCCCTG
ACGATCACGCCAATCCTGCAGCAGACGCACCTCCTGCCGCAACAGGCACC
CAATCCACCCCAGCAGCAACCGCAGCAGCCACAGCCGCCGGATCTCACCT
TCCACTGCATGTGCTGTGCGGAGTTCTTCGTCCATCCGCTGGCGCTGTAC
CAGCACATGAACACCCTGCACCCCCATGAGCCGGGCAATGGACAGCAAGA
GCAGGAGAGCCCGGGCGACGAGAGCGAGGACTACAGCTGGATATTCGAGC
CGGTGTGCGAGCTGGCGGAGGATGGCAGCGACTCGTCGGATGGGAGCGCC
TCCTCGGGCTCCGACAGCTCCTCGTCGTCGGACGACGACCATGACCATGA
CGACGACGACAGCAGCAGCTCCAGTTCGAGTTCCAGCAACTCGAGCTCAT
CAAGCAGCTCGGTGCCGACCACCAGCAACTCCAATACCCAGCAGAGCCAG
GAGTCAGTGCAGCCACTTCACGGCCTGGTTGCCGGTCCGGGCTACAATGA
GTTCCAGCTGCAGATGACAGATCCGCGGGAGTCCACCTCCATATTCATGG
TGCAGCCGACCGTAAGCGTCACGCCCTTGCAGCAGCTACTACCACCGGCA
CCCACTGTTAGCCCGGGATTGGGCCTGCAATCGACGCCCATCAAGCGGCG
GCGCGGAAGGCGGAGCAACATCGGTGCACCCGTGATGGATCCAGCGTTGA
ATGGCAACCAGAAATGCTTCCAGTGCACGCACTGCGAGGCGAGCTTTCCC
ACGCCGGCGATCTGTCAAGCACGTGCGCTCGCACAT
MXO01372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-PA | 2211 | CG12299-RA | 1..793 | 9..801 | 3915 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-RA | 3310 | CG12299-RA | 436..1265 | 9..836 | 4070 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10737888..10738717 | 9..836 | 4020 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 22:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6900 | 400..520 | 130 | 59.5 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..173 | 70..129 | 126 | 70 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9203 | 70..129 | 126 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2814..2853 | 401..440 | 110 | 75 | Plus |
MXO01372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:58 Download gff for
MXO01372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-PA | 1..830 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:52 Download gff for
MXO01372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 436..1265 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:18 Download gff for
MXO01372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 436..1265 | 9..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:18 Download gff for
MXO01372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10737888..10738717 | 9..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:52 Download gff for
MXO01372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10737888..10738717 | 9..836 | 99 | | Plus |