Clone MXO01372 Report

Search the DGRC for MXO01372

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:72
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG12299-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01372.3prime Sequence

260 bp (259 high quality bases) assembled on 2007-03-15

> MXO01372.3prime
ATGGTCTAGAAAGCTTGCGATGAGCGCATCGGTGTAAACCTCCTCCTCGT
TGACGACAAAGTCGCCGAACACCTCCTCCTGACAGCCCACGTCCATGTCG
CCGAAGTCCTCGTAGTACATGTCAGAGTCTAGCAGGATCTGTTCCTCCTG
CAGCCCGAGAATGGGATAGCCCGGATTGGTGAGAGCGTCCTCTGCTGCCA
GCACTTCCGTTTTCACCTCCGCCGGCTCCTCTGGTTCATCTTGTTCCTCC
TCCTCATCCG

MXO01372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-PA 2211 CG12299-RA 1967..2208 260..19 1210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-RA 3310 CG12299-RA 2402..2643 260..19 1210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10739854..10740095 260..19 1210 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:40:26 has no hits.

MXO01372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:58 Download gff for MXO01372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-PA 1967..2211 18..260 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:36 Download gff for MXO01372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 2402..2643 19..260 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:31 Download gff for MXO01372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 2402..2643 19..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:31 Download gff for MXO01372.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10739854..10740095 19..260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:36 Download gff for MXO01372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10739854..10740095 19..260 100   Minus

MXO01372.5prime Sequence

836 bp (668 high quality bases) assembled on 2007-03-15

> MXO01372.5prime
CAGTCGACATGGCCGTGCAGCTGAAACAGAGCTACCACCACCTGCCCCTG
ACGATCACGCCAATCCTGCAGCAGACGCACCTCCTGCCGCAACAGGCACC
CAATCCACCCCAGCAGCAACCGCAGCAGCCACAGCCGCCGGATCTCACCT
TCCACTGCATGTGCTGTGCGGAGTTCTTCGTCCATCCGCTGGCGCTGTAC
CAGCACATGAACACCCTGCACCCCCATGAGCCGGGCAATGGACAGCAAGA
GCAGGAGAGCCCGGGCGACGAGAGCGAGGACTACAGCTGGATATTCGAGC
CGGTGTGCGAGCTGGCGGAGGATGGCAGCGACTCGTCGGATGGGAGCGCC
TCCTCGGGCTCCGACAGCTCCTCGTCGTCGGACGACGACCATGACCATGA
CGACGACGACAGCAGCAGCTCCAGTTCGAGTTCCAGCAACTCGAGCTCAT
CAAGCAGCTCGGTGCCGACCACCAGCAACTCCAATACCCAGCAGAGCCAG
GAGTCAGTGCAGCCACTTCACGGCCTGGTTGCCGGTCCGGGCTACAATGA
GTTCCAGCTGCAGATGACAGATCCGCGGGAGTCCACCTCCATATTCATGG
TGCAGCCGACCGTAAGCGTCACGCCCTTGCAGCAGCTACTACCACCGGCA
CCCACTGTTAGCCCGGGATTGGGCCTGCAATCGACGCCCATCAAGCGGCG
GCGCGGAAGGCGGAGCAACATCGGTGCACCCGTGATGGATCCAGCGTTGA
ATGGCAACCAGAAATGCTTCCAGTGCACGCACTGCGAGGCGAGCTTTCCC
ACGCCGGCGATCTGTCAAGCACGTGCGCTCGCACAT

MXO01372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-PA 2211 CG12299-RA 1..793 9..801 3915 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-RA 3310 CG12299-RA 436..1265 9..836 4070 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10737888..10738717 9..836 4020 99.5 Plus
Blast to na_te.dros performed 2014-11-28 22:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6787..6900 400..520 130 59.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 115..173 70..129 126 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9145..9203 70..129 126 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2814..2853 401..440 110 75 Plus

MXO01372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:58 Download gff for MXO01372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-PA 1..830 9..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:52 Download gff for MXO01372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 436..1265 9..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:18 Download gff for MXO01372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 436..1265 9..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:18 Download gff for MXO01372.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10737888..10738717 9..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:52 Download gff for MXO01372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10737888..10738717 9..836 99   Plus