MXO01373.5prime Sequence
383 bp (381 high quality bases) assembled on 2007-03-15
> MXO01373.5prime
CAGTCGACATGGAGCTGCCTTCAATGGTGGAGCGTTCGGGTGATCGCTTG
GTGGTGCGCAGCTTGGTTAGTGGTGCTCCACTTTATCAGTCATCTATTGA
GGGCGGAGCAGGTGCTGTGCTTCCTATGTCCCAAAGCGTGCAGCCGCTAA
TAGGTCAGGACTTTTTGGAGCAACAACTGGAGCAGTATAAGGCGAATAAC
TTTATGTTTCCACTATCGATGGCCGGGTTTGTTTCCGCAGACTCTGCACC
ACCGGGGGACTTGGCCAAGGAAAATATGGAGAACTCACTGCCAGATGGTA
ATCCGTGCAACAACAACAACGACGATGAGCTGCCGCAGTGCAAGATACGG
CGTAACTACAGCTGCAACCAGTGCGCATTCTTC
MXO01373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-PA | 2244 | CG5204-RA | 1..375 | 9..383 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-RA | 2364 | CG5204-RA | 73..448 | 8..383 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13160805..13161180 | 8..383 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:38 has no hits.
MXO01373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:59 Download gff for
MXO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-PA | 1..375 | 9..383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:55 Download gff for
MXO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 68..448 | 1..383 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:30 Download gff for
MXO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 68..448 | 1..383 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:30 Download gff for
MXO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13160800..13161180 | 1..383 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:55 Download gff for
MXO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13160800..13161180 | 1..383 | 98 | | Plus |
MXO01373.3prime Sequence
805 bp (644 high quality bases) assembled on 2007-03-15
> MXO01373.3prime
ATGGTCTAGAAAGCTTGCATCGCTTTCATTGGATTCATCAGCGGATGTCG
TTTCGTCTGATTGACCACCATCTGTCTTGGTCAAATTCATAGGCGACCCT
TTGGGCTTTGGCATGACTTGTGATGAATTCAATGATTTAAATGACAAGGG
TTCTAAATTTGGCTCCGTCTTGGCTCCCTCTTGCGGCAGCTCATCGCTGT
TGCCTGCCAAGTCCTCCGTCTGGTCATCCCTGGGCTTTCGTAAATCCAGT
GCCGAGGTCGAATGAGCACTATCCACCATCTCGATGATCTCCTCCGTTTC
CATGGGATGATGGTCGTCTAGCTTCTCCGGCGGCATCACAATCATTTCAC
CCGTGCGCATTCCCTTCGAATCGGCCAATTGTTCGGCGCTTACCTTCATC
ATAGTCAGATACTGATTGTACTTGGCGTAGTTGCGCCTACCGGTCTCATC
GTTCATCAGCACCTGGGCCTGGTTATGGGATCTATCGCGGAGGGCCTTCA
AACGGATGTGCTTGGTGATGTCCCAGCGCCAGTTGGAGCGATAGGCGCAC
AGAGAGCATTCAAAGGGCTTCCTATTTAGATGACCAACGATGTGGACATG
GAAGCGAGATGCAGTGGCTGCCCAAAAACTGCAATGAGGACACTTAAAAA
CCTTCTTCAATGGCGCCAAATCTTCGGGTTCCTCTGGCAAAACTTCTGTG
ACCTCCCCATAGCCAGGAGCTGTTTCTACGCCGCAATAACTGAGATCAGT
GGGAGCATTGGGGAAGTCCTCATCGTGAAGATCCACCTCCCGCGTGATAG
AAGCC
MXO01373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-PA | 2244 | CG5204-RA | 1470..2241 | 790..19 | 3860 | 100 | Minus |
| CG9932-PA | 6516 | CG9932-RA | 2548..2592 | 540..496 | 200 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-RA | 2364 | CG5204-RA | 1528..2314 | 805..19 | 3890 | 99.7 | Minus |
| CG9932-RE | 8986 | CG9932-RE | 3444..3713 | 659..390 | 585 | 81.1 | Minus |
| CG9932-RD | 7646 | CG9932-RD | 3444..3713 | 659..390 | 585 | 81.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13162418..13163103 | 704..19 | 3430 | 100 | Minus |
| 2L | 23513712 | 2L | 13028236..13028505 | 390..659 | 585 | 81.1 | Plus |
| 2L | 23513712 | 2L | 13162260..13162364 | 805..701 | 465 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:29 has no hits.
MXO01373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:58 Download gff for
MXO01373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-PA | 1455..2244 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:50 Download gff for
MXO01373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 1528..2317 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:25 Download gff for
MXO01373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 1528..2317 | 15..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:25 Download gff for
MXO01373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13162260..13162362 | 703..805 | 98 | -> | Minus |
| 2L | 13162420..13163106 | 15..702 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:50 Download gff for
MXO01373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13162260..13162362 | 703..805 | 98 | -> | Minus |
| arm_2L | 13162420..13163106 | 15..702 | 99 | | Minus |
