Clone MXO01374 Report

Search the DGRC for MXO01374

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:74
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptzf30C-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01374.3prime Sequence

817 bp (747 high quality bases) assembled on 2007-03-15

> MXO01374.3prime
ATGGTCTAGAAAGCTTGCCTCCATTCGCCGGGCCTCGGCTTGCATGGTCT
GCAGTACGATGTGTGGCACCAGGTGTGTGGAGGCGTAGTTCAGGGGCACC
GTGGCCAATGGCGCTGAGCCGTCAGATGGGAAGTTGAGCTCCTGTGCCAT
GGGCATGTCCCTGTCGATGACATCCTGGGCGATCAAGGTCTTGGTCTCCT
CGTACTCCATGCCCGCCTCCGGCTTAGCGCCCATCAAGAGTTTTCCGCGC
TGCACGCCCATGTACTGGGTGGCCTTGGCATTCAAAGGCAACTGGCCGCA
GGTATCGGCATGCACCTTGCGATGTGCCTGCAAGTTGGAGATGCAAGTGA
AGCGCTTGCCGCAGTTATTGCACAGGAAACTCTTACCGCCCCTGTGCACG
GTCATGTGGGTGAGCAGACTCTCCCTGTACGGATACTCCTTGGGACACAG
GTGGCACTTGTACGGCTTGTAGTCCGTGTGGCGCGTCTTCAAGTGCGACT
TGTATTGCGCCTTCACCTTGAATGTTTTGCCGCACTTATCGCACTGGTAC
GGAGTGTCTGCCTTGTGAAGGAGCATGTGCGTCTTGAGAATACCAGCGGT
GGACAAATGTTTGCCGCAAACGCTGCAGCCGTAGAGCGGTAGACGGCCGC
AGTCAGAACGAACGTGGTCAGAGAGCGATGTGCGTCCGGTGAACTTCTTG
CCGCACTTGTCGCAGATGAGGTTGCGCTGCTGGCTGCGCGGCTCCTTCTT
CGAGTGGAAATTGCGTTCGTGGTTCTTGAGGCTGTCGTGTCCGGTCATGT
ACTTGTCGCATTTTTCG

MXO01374.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3998-PA 2334 zf30C-RA 1533..2331 817..19 3895 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
zf30C-RA 2976 CG3998-RA 1941..2739 817..19 3935 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9761564..9762138 593..19 2815 99.3 Minus
2L 23513712 2L 9761275..9761499 817..593 1125 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:06:17 has no hits.

MXO01374.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:59 Download gff for MXO01374.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3998-PA 1533..2334 15..817 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:38 Download gff for MXO01374.3prime
Subject Subject Range Query Range Percent Splice Strand
zf30C-RA 1941..2745 11..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:39 Download gff for MXO01374.3prime
Subject Subject Range Query Range Percent Splice Strand
zf30C-RA 1941..2745 11..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:39 Download gff for MXO01374.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9761275..9761499 593..817 100 -> Minus
2L 9761565..9762144 11..592 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:38 Download gff for MXO01374.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9761275..9761499 593..817 100 -> Minus
arm_2L 9761565..9762144 11..592 98   Minus

MXO01374.5prime Sequence

781 bp (638 high quality bases) assembled on 2007-03-15

> MXO01374.5prime
CAGTCGACATGGAAACCGAGTCGATGGCTCCAAGCAGCAGTGCGGCGGCT
GCAGCCACCAAGCTCCTGGTGGAGATCACCACCGACGGAATACCCAAGCT
GCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTAGCCGGATATGTGA
AGCACGTAAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCCGTCACTGC
GATGCTCGGTTTTGCCACGAGGAGGAGCTCACCCAGCATGCAAAGGATGA
GCACGGAGTCACTGGCGCGGTAGCTGGACAGGAGCGAAAGCCTTTCGTTT
GTGAAAAGTGCGGCGCGGAGTACAAGTACCAGGAGGCATACCGTCGCCAC
TGCAGGACCAAGTGTGGCGAGGAAAAGCTACCCAGGGATGACCCCCCACC
AATGGAGTGCAAGTGCTGCTACACACACTTCTCTAGCGCCTCTAACCTAT
CCAAGCATCGACGCAGTCGTCCCGACACCTGTGGACAGCCGGAATACGAT
TCGCCCGGTTCATCCGATGGGATGAAGAAACATAAGGCCTTCCGCAAGAA
GGACAGAAACAGGGACTCTGATGATGAAGATACCACCAGCGAAGAATCGG
AAGATAGCGATGATGACATTCCTCTGGCCAGTCGTCTGAAGACGAAGCTC
AAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCCGACTTCGA
AACCCACAACAGTGAGGACGATGCGGATGCATCCGGATTCCAGCTTCCTC
CGCCGGCTATGGTCAAGGTGGAGGCCTTCGA

MXO01374.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3998-PA 2334 zf30C-RA 1..380 9..388 1900 100 Plus
CG3998-PA 2334 zf30C-RA 390..773 398..781 1820 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
zf30C-RA 2976 CG3998-RA 405..1181 5..781 3750 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9759679..9760054 12..387 1880 100 Plus
2L 23513712 2L 9760128..9760515 394..781 1865 98.7 Plus
Blast to na_te.dros performed on 2014-11-28 19:54:27 has no hits.

MXO01374.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:00 Download gff for MXO01374.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3998-PA 1..772 9..780 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:19 Download gff for MXO01374.5prime
Subject Subject Range Query Range Percent Splice Strand
zf30C-RA 400..1180 1..780 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:26 Download gff for MXO01374.5prime
Subject Subject Range Query Range Percent Splice Strand
zf30C-RA 400..1180 1..780 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:26 Download gff for MXO01374.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9759671..9760053 1..387 98 -> Plus
2L 9760121..9760514 388..780 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:19 Download gff for MXO01374.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9759671..9760053 1..387 98 -> Plus
arm_2L 9760121..9760514 388..780 97   Plus