MXO01374.3prime Sequence
817 bp (747 high quality bases) assembled on 2007-03-15
> MXO01374.3prime
ATGGTCTAGAAAGCTTGCCTCCATTCGCCGGGCCTCGGCTTGCATGGTCT
GCAGTACGATGTGTGGCACCAGGTGTGTGGAGGCGTAGTTCAGGGGCACC
GTGGCCAATGGCGCTGAGCCGTCAGATGGGAAGTTGAGCTCCTGTGCCAT
GGGCATGTCCCTGTCGATGACATCCTGGGCGATCAAGGTCTTGGTCTCCT
CGTACTCCATGCCCGCCTCCGGCTTAGCGCCCATCAAGAGTTTTCCGCGC
TGCACGCCCATGTACTGGGTGGCCTTGGCATTCAAAGGCAACTGGCCGCA
GGTATCGGCATGCACCTTGCGATGTGCCTGCAAGTTGGAGATGCAAGTGA
AGCGCTTGCCGCAGTTATTGCACAGGAAACTCTTACCGCCCCTGTGCACG
GTCATGTGGGTGAGCAGACTCTCCCTGTACGGATACTCCTTGGGACACAG
GTGGCACTTGTACGGCTTGTAGTCCGTGTGGCGCGTCTTCAAGTGCGACT
TGTATTGCGCCTTCACCTTGAATGTTTTGCCGCACTTATCGCACTGGTAC
GGAGTGTCTGCCTTGTGAAGGAGCATGTGCGTCTTGAGAATACCAGCGGT
GGACAAATGTTTGCCGCAAACGCTGCAGCCGTAGAGCGGTAGACGGCCGC
AGTCAGAACGAACGTGGTCAGAGAGCGATGTGCGTCCGGTGAACTTCTTG
CCGCACTTGTCGCAGATGAGGTTGCGCTGCTGGCTGCGCGGCTCCTTCTT
CGAGTGGAAATTGCGTTCGTGGTTCTTGAGGCTGTCGTGTCCGGTCATGT
ACTTGTCGCATTTTTCG
MXO01374.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3998-PA | 2334 | zf30C-RA | 1533..2331 | 817..19 | 3895 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zf30C-RA | 2976 | CG3998-RA | 1941..2739 | 817..19 | 3935 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9761564..9762138 | 593..19 | 2815 | 99.3 | Minus |
2L | 23513712 | 2L | 9761275..9761499 | 817..593 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:06:17 has no hits.
MXO01374.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:59 Download gff for
MXO01374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3998-PA | 1533..2334 | 15..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:38 Download gff for
MXO01374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zf30C-RA | 1941..2745 | 11..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:39 Download gff for
MXO01374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zf30C-RA | 1941..2745 | 11..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:39 Download gff for
MXO01374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9761275..9761499 | 593..817 | 100 | -> | Minus |
2L | 9761565..9762144 | 11..592 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:38 Download gff for
MXO01374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9761275..9761499 | 593..817 | 100 | -> | Minus |
arm_2L | 9761565..9762144 | 11..592 | 98 | | Minus |
MXO01374.5prime Sequence
781 bp (638 high quality bases) assembled on 2007-03-15
> MXO01374.5prime
CAGTCGACATGGAAACCGAGTCGATGGCTCCAAGCAGCAGTGCGGCGGCT
GCAGCCACCAAGCTCCTGGTGGAGATCACCACCGACGGAATACCCAAGCT
GCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTAGCCGGATATGTGA
AGCACGTAAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCCGTCACTGC
GATGCTCGGTTTTGCCACGAGGAGGAGCTCACCCAGCATGCAAAGGATGA
GCACGGAGTCACTGGCGCGGTAGCTGGACAGGAGCGAAAGCCTTTCGTTT
GTGAAAAGTGCGGCGCGGAGTACAAGTACCAGGAGGCATACCGTCGCCAC
TGCAGGACCAAGTGTGGCGAGGAAAAGCTACCCAGGGATGACCCCCCACC
AATGGAGTGCAAGTGCTGCTACACACACTTCTCTAGCGCCTCTAACCTAT
CCAAGCATCGACGCAGTCGTCCCGACACCTGTGGACAGCCGGAATACGAT
TCGCCCGGTTCATCCGATGGGATGAAGAAACATAAGGCCTTCCGCAAGAA
GGACAGAAACAGGGACTCTGATGATGAAGATACCACCAGCGAAGAATCGG
AAGATAGCGATGATGACATTCCTCTGGCCAGTCGTCTGAAGACGAAGCTC
AAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCCGACTTCGA
AACCCACAACAGTGAGGACGATGCGGATGCATCCGGATTCCAGCTTCCTC
CGCCGGCTATGGTCAAGGTGGAGGCCTTCGA
MXO01374.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3998-PA | 2334 | zf30C-RA | 1..380 | 9..388 | 1900 | 100 | Plus |
CG3998-PA | 2334 | zf30C-RA | 390..773 | 398..781 | 1820 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zf30C-RA | 2976 | CG3998-RA | 405..1181 | 5..781 | 3750 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9759679..9760054 | 12..387 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 9760128..9760515 | 394..781 | 1865 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:27 has no hits.
MXO01374.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:00 Download gff for
MXO01374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3998-PA | 1..772 | 9..780 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:19 Download gff for
MXO01374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zf30C-RA | 400..1180 | 1..780 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:26 Download gff for
MXO01374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zf30C-RA | 400..1180 | 1..780 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:26 Download gff for
MXO01374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9759671..9760053 | 1..387 | 98 | -> | Plus |
2L | 9760121..9760514 | 388..780 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:19 Download gff for
MXO01374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9759671..9760053 | 1..387 | 98 | -> | Plus |
arm_2L | 9760121..9760514 | 388..780 | 97 | | Plus |