MXO01375.3prime Sequence
851 bp (783 high quality bases) assembled on 2007-03-15
> MXO01375.3prime
ATGGTCTAGAAAGCTTGCATGCTCTCCGCGCAAAAGCTCCATTAGCAAAT
TGAAATCAGCTCCATCGCGAGTCTTGATCGTCAACATCTCCTTGCCAAGC
TGGCACGTTCGCTGCAAATCAGGAATGCGTAGCAAAAGCTCCCCAAACTT
GGATGGCGTGTCAGGATAATGCGCCAGGGTGTAAGCTTGCAAGCTCTGCA
AAGCTTTTTCCTGACACTCGCGCACCTTTACCGCTTCCTGTAACTCTGTC
GTATCTGACTGCAACAGCACAATAACTTTCATGGCAACATATTCGTAGCG
ATCAACGCGCAATCGCCTCAGGTGATCTGTTAGGTTGAGCATCCGTTCAA
TGCAAGTCTGCAAGCCATTTGATTTGGCCTGCTATACCCCCATCTTCCTG
CCTTGTGACATTTTAATCTCACCAGGAGTATCAATTGATCTAAAACAGCA
GGAGAAGAGCAACAGCTCGCACCACGAGTTAATGAGCAAGCAGATTTGGT
CATCGATCGAAATGTTCTTAAAAAGCGGCAAGCTCTTGCACCATTTGACG
ATTTTATAAAGACGGTGATCAGCCACGTTGCAGAGATGAGCGATAAGATC
AGGATTGGCATTCTCGCCATTGGACGAGAGACCAGCACTAGCCAGTAGTG
GATTGGTGAGTTGTGCATGGGCGCCTGAGGATGTACCTGACGATGACGAC
GACGAAGAGCTGCCAGAGGCGAATGCGGACAGTGGTTGGTTGATGCGGGC
CAGCTCTGCATCGGTGTACTGCCACAGATGCTCTACATCCATGATTTCCT
GCAGTAGTGGTGGTACGCTTCCCGTTCGGAGGCTTTGCTGGCCCGTCTCC
G
MXO01375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8676-PB | 2427 | Hr39-RB | 1592..2051 | 851..392 | 2250 | 99.5 | Minus |
CG8676-PA | 2427 | Hr39-RA | 1592..2051 | 851..392 | 2250 | 99.5 | Minus |
CG8676-PD | 2427 | Hr39-RD | 1592..2051 | 851..392 | 2250 | 99.5 | Minus |
CG8676-PC | 2106 | Hr39-RC | 1592..2051 | 851..392 | 2250 | 99.5 | Minus |
CG8676-PB | 2427 | Hr39-RB | 2061..2424 | 382..19 | 1820 | 100 | Minus |
CG8676-PA | 2427 | Hr39-RA | 2061..2424 | 382..19 | 1820 | 100 | Minus |
CG8676-PD | 2427 | Hr39-RD | 2061..2424 | 382..19 | 1820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr39-RD | 4828 | CG8676-RD | 2147..2979 | 851..19 | 4045 | 99 | Minus |
Hr39-RA | 3291 | CG8676-RA | 2089..2921 | 851..19 | 4045 | 99 | Minus |
Hr39-RB | 4844 | CG8676-RB | 2163..2995 | 851..19 | 4045 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21255535..21255828 | 801..508 | 1470 | 100 | Minus |
2L | 23513712 | 2L | 21257101..21257257 | 256..100 | 785 | 100 | Minus |
2L | 23513712 | 2L | 21255896..21256046 | 508..358 | 650 | 95.4 | Minus |
2L | 23513712 | 2L | 21256943..21257048 | 360..255 | 530 | 100 | Minus |
2L | 23513712 | 2L | 21257743..21257826 | 102..19 | 420 | 100 | Minus |
2L | 23513712 | 2L | 21255261..21255314 | 851..798 | 255 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:43 has no hits.
MXO01375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:00 Download gff for
MXO01375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8676-PC | 1592..2085 | 358..851 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:00 Download gff for
MXO01375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr39-RB | 2163..3003 | 11..851 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:42 Download gff for
MXO01375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr39-RB | 2163..3003 | 11..851 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:42 Download gff for
MXO01375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21255261..21255313 | 799..851 | 98 | -> | Minus |
2L | 21255538..21255828 | 508..798 | 100 | -> | Minus |
2L | 21255897..21256046 | 358..507 | 95 | -> | Minus |
2L | 21256946..21257048 | 255..357 | 100 | -> | Minus |
2L | 21257103..21257257 | 100..254 | 100 | -> | Minus |
2L | 21257746..21257834 | 11..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:00 Download gff for
MXO01375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21257103..21257257 | 100..254 | 100 | -> | Minus |
arm_2L | 21257746..21257834 | 11..99 | 95 | | Minus |
arm_2L | 21255261..21255313 | 799..851 | 98 | -> | Minus |
arm_2L | 21255538..21255828 | 508..798 | 100 | -> | Minus |
arm_2L | 21255897..21256046 | 358..507 | 95 | -> | Minus |
arm_2L | 21256946..21257048 | 255..357 | 100 | -> | Minus |
MXO01375.5prime Sequence
896 bp (708 high quality bases) assembled on 2007-03-15
> MXO01375.5prime
CAGTCGACATGCCAAACATGTCCAGCATCAAAGCGGAGCAGCAAAGCGGT
CCTCTTGGAGGAAGTAGCGGCTATCAAGTACCGGTCAACATGTGCACCAC
CACAGTCGCGAATACGACGACCACTTTGGGAAGCTCCGCCGGGGGAGCCA
CTGGCTCCCGGCACAACGTCTCCGTGACAAACATCAAGTGCGAACTAGAC
GAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCAAACTACGT
TCACGGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCATAGGGAGT
CCGATTCGGAGGAGGAGCTGGCAAGTATTGAGAACTTGAAGGTTCGGCGA
AGGACGGCGGCGGACAAAAATGGTCCTCGTCCAATGTCCTGTGACCCCCA
GCTGAGCGATACTGAGGTCAACGGGGGAAAAGAGCTGATGGAAATGGAGC
CAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCACAACCCGTC
TGCGCACTACAACCGATAAAAACAGAGCTAGAGAACATTGCAGGCGAGAT
GCAGATTCAAGAGAAGTGTTACCCCCAGTCCAACACACAACATCACGCTG
CCACAAAATTAAAAGTGGCCCCGACGCAAAGTGATCCGATCAATCTCAAG
TTCGAACCGCCTCTGGGAGACAATTCTCCGCTACTGGCTGCACGTAGCAA
GTCCAGCAGTGGAGGCCACCTACCACTGCCAACGAATCCCAGTCCCGACT
CCGCCATACATTCCGTCTACACGCACAGCTCCCCCTCGCAGTCGCCTCTG
ACGTCGCGCCACGCCCCCTACACTCCGTCTCTGAGCCGCAACAACAGCGA
CGCCTCGCACAGTAGCTGCTACGGCTATAGCTCCGAATTCAGTCCC
MXO01375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8676-PC | 2106 | Hr39-RC | 392..888 | 400..896 | 2410 | 99.3 | Plus |
CG8676-PB | 2427 | Hr39-RB | 392..888 | 400..896 | 2410 | 99.3 | Plus |
CG8676-PA | 2427 | Hr39-RA | 392..888 | 400..896 | 2410 | 99.3 | Plus |
CG8676-PD | 2427 | Hr39-RD | 392..888 | 400..896 | 2410 | 99.3 | Plus |
CG8676-PC | 2106 | Hr39-RC | 1..383 | 9..391 | 1915 | 100 | Plus |
CG8676-PB | 2427 | Hr39-RB | 1..383 | 9..391 | 1915 | 100 | Plus |
CG8676-PA | 2427 | Hr39-RA | 1..383 | 9..391 | 1915 | 100 | Plus |
CG8676-PD | 2427 | Hr39-RD | 1..383 | 9..391 | 1915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr39-RD | 4828 | CG8676-RD | 556..1443 | 9..896 | 4320 | 99.1 | Plus |
Hr39-RA | 3291 | CG8676-RA | 498..1385 | 9..896 | 4320 | 99.1 | Plus |
Hr39-RB | 4844 | CG8676-RB | 572..1459 | 9..896 | 4320 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21253670..21254557 | 9..896 | 4320 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:08:26 has no hits.
MXO01375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:00 Download gff for
MXO01375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8676-PA | 1..888 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:36 Download gff for
MXO01375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr39-RB | 572..1459 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:48 Download gff for
MXO01375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr39-RB | 572..1459 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:48 Download gff for
MXO01375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21253670..21254557 | 9..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:36 Download gff for
MXO01375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21253670..21254557 | 9..896 | 99 | | Plus |