Clone MXO01375 Report

Search the DGRC for MXO01375

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:75
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptHr39-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01375.3prime Sequence

851 bp (783 high quality bases) assembled on 2007-03-15

> MXO01375.3prime
ATGGTCTAGAAAGCTTGCATGCTCTCCGCGCAAAAGCTCCATTAGCAAAT
TGAAATCAGCTCCATCGCGAGTCTTGATCGTCAACATCTCCTTGCCAAGC
TGGCACGTTCGCTGCAAATCAGGAATGCGTAGCAAAAGCTCCCCAAACTT
GGATGGCGTGTCAGGATAATGCGCCAGGGTGTAAGCTTGCAAGCTCTGCA
AAGCTTTTTCCTGACACTCGCGCACCTTTACCGCTTCCTGTAACTCTGTC
GTATCTGACTGCAACAGCACAATAACTTTCATGGCAACATATTCGTAGCG
ATCAACGCGCAATCGCCTCAGGTGATCTGTTAGGTTGAGCATCCGTTCAA
TGCAAGTCTGCAAGCCATTTGATTTGGCCTGCTATACCCCCATCTTCCTG
CCTTGTGACATTTTAATCTCACCAGGAGTATCAATTGATCTAAAACAGCA
GGAGAAGAGCAACAGCTCGCACCACGAGTTAATGAGCAAGCAGATTTGGT
CATCGATCGAAATGTTCTTAAAAAGCGGCAAGCTCTTGCACCATTTGACG
ATTTTATAAAGACGGTGATCAGCCACGTTGCAGAGATGAGCGATAAGATC
AGGATTGGCATTCTCGCCATTGGACGAGAGACCAGCACTAGCCAGTAGTG
GATTGGTGAGTTGTGCATGGGCGCCTGAGGATGTACCTGACGATGACGAC
GACGAAGAGCTGCCAGAGGCGAATGCGGACAGTGGTTGGTTGATGCGGGC
CAGCTCTGCATCGGTGTACTGCCACAGATGCTCTACATCCATGATTTCCT
GCAGTAGTGGTGGTACGCTTCCCGTTCGGAGGCTTTGCTGGCCCGTCTCC
G

MXO01375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8676-PB 2427 Hr39-RB 1592..2051 851..392 2250 99.5 Minus
CG8676-PA 2427 Hr39-RA 1592..2051 851..392 2250 99.5 Minus
CG8676-PD 2427 Hr39-RD 1592..2051 851..392 2250 99.5 Minus
CG8676-PC 2106 Hr39-RC 1592..2051 851..392 2250 99.5 Minus
CG8676-PB 2427 Hr39-RB 2061..2424 382..19 1820 100 Minus
CG8676-PA 2427 Hr39-RA 2061..2424 382..19 1820 100 Minus
CG8676-PD 2427 Hr39-RD 2061..2424 382..19 1820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Hr39-RD 4828 CG8676-RD 2147..2979 851..19 4045 99 Minus
Hr39-RA 3291 CG8676-RA 2089..2921 851..19 4045 99 Minus
Hr39-RB 4844 CG8676-RB 2163..2995 851..19 4045 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21255535..21255828 801..508 1470 100 Minus
2L 23513712 2L 21257101..21257257 256..100 785 100 Minus
2L 23513712 2L 21255896..21256046 508..358 650 95.4 Minus
2L 23513712 2L 21256943..21257048 360..255 530 100 Minus
2L 23513712 2L 21257743..21257826 102..19 420 100 Minus
2L 23513712 2L 21255261..21255314 851..798 255 98.1 Minus
Blast to na_te.dros performed on 2014-11-28 22:12:43 has no hits.

MXO01375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:00 Download gff for MXO01375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8676-PC 1592..2085 358..851 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:00 Download gff for MXO01375.3prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 2163..3003 11..851 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:42 Download gff for MXO01375.3prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 2163..3003 11..851 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:42 Download gff for MXO01375.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21255261..21255313 799..851 98 -> Minus
2L 21255538..21255828 508..798 100 -> Minus
2L 21255897..21256046 358..507 95 -> Minus
2L 21256946..21257048 255..357 100 -> Minus
2L 21257103..21257257 100..254 100 -> Minus
2L 21257746..21257834 11..99 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:00 Download gff for MXO01375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21257103..21257257 100..254 100 -> Minus
arm_2L 21257746..21257834 11..99 95   Minus
arm_2L 21255261..21255313 799..851 98 -> Minus
arm_2L 21255538..21255828 508..798 100 -> Minus
arm_2L 21255897..21256046 358..507 95 -> Minus
arm_2L 21256946..21257048 255..357 100 -> Minus

MXO01375.5prime Sequence

896 bp (708 high quality bases) assembled on 2007-03-15

> MXO01375.5prime
CAGTCGACATGCCAAACATGTCCAGCATCAAAGCGGAGCAGCAAAGCGGT
CCTCTTGGAGGAAGTAGCGGCTATCAAGTACCGGTCAACATGTGCACCAC
CACAGTCGCGAATACGACGACCACTTTGGGAAGCTCCGCCGGGGGAGCCA
CTGGCTCCCGGCACAACGTCTCCGTGACAAACATCAAGTGCGAACTAGAC
GAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCAAACTACGT
TCACGGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCATAGGGAGT
CCGATTCGGAGGAGGAGCTGGCAAGTATTGAGAACTTGAAGGTTCGGCGA
AGGACGGCGGCGGACAAAAATGGTCCTCGTCCAATGTCCTGTGACCCCCA
GCTGAGCGATACTGAGGTCAACGGGGGAAAAGAGCTGATGGAAATGGAGC
CAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCACAACCCGTC
TGCGCACTACAACCGATAAAAACAGAGCTAGAGAACATTGCAGGCGAGAT
GCAGATTCAAGAGAAGTGTTACCCCCAGTCCAACACACAACATCACGCTG
CCACAAAATTAAAAGTGGCCCCGACGCAAAGTGATCCGATCAATCTCAAG
TTCGAACCGCCTCTGGGAGACAATTCTCCGCTACTGGCTGCACGTAGCAA
GTCCAGCAGTGGAGGCCACCTACCACTGCCAACGAATCCCAGTCCCGACT
CCGCCATACATTCCGTCTACACGCACAGCTCCCCCTCGCAGTCGCCTCTG
ACGTCGCGCCACGCCCCCTACACTCCGTCTCTGAGCCGCAACAACAGCGA
CGCCTCGCACAGTAGCTGCTACGGCTATAGCTCCGAATTCAGTCCC

MXO01375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8676-PC 2106 Hr39-RC 392..888 400..896 2410 99.3 Plus
CG8676-PB 2427 Hr39-RB 392..888 400..896 2410 99.3 Plus
CG8676-PA 2427 Hr39-RA 392..888 400..896 2410 99.3 Plus
CG8676-PD 2427 Hr39-RD 392..888 400..896 2410 99.3 Plus
CG8676-PC 2106 Hr39-RC 1..383 9..391 1915 100 Plus
CG8676-PB 2427 Hr39-RB 1..383 9..391 1915 100 Plus
CG8676-PA 2427 Hr39-RA 1..383 9..391 1915 100 Plus
CG8676-PD 2427 Hr39-RD 1..383 9..391 1915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Hr39-RD 4828 CG8676-RD 556..1443 9..896 4320 99.1 Plus
Hr39-RA 3291 CG8676-RA 498..1385 9..896 4320 99.1 Plus
Hr39-RB 4844 CG8676-RB 572..1459 9..896 4320 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21253670..21254557 9..896 4320 99.1 Plus
Blast to na_te.dros performed on 2014-11-28 22:08:26 has no hits.

MXO01375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:00 Download gff for MXO01375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8676-PA 1..888 9..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:36 Download gff for MXO01375.5prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 572..1459 9..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:48 Download gff for MXO01375.5prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 572..1459 9..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:48 Download gff for MXO01375.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21253670..21254557 9..896 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:36 Download gff for MXO01375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21253670..21254557 9..896 99   Plus