MXO01376.3prime Sequence
858 bp (667 high quality bases) assembled on 2007-03-15
> MXO01376.3prime
ATGGTCTAGAAAGCTTGCTGTATGCAGAGCGTACGGCTGCTGGGACGGCT
GCTGTTGCTGCTCAATGCTGCCGGGTGGCGTGGCAGCAGCAGCAGCGGCC
CCGCCTCCACTGGGAACAATGCGTATCATACCCGGCTGGATCCTAACGTT
CTCACAGGCCTCACAAATATTTAGCTGTGGATGGTTGCGGAATGTACACA
TGTTGCAGGCCCACGAGTCCAGCGTCTCCTCCTCCTCATCCACATCGGAG
TCGGACAGGAATTCTTCCTCCTGTTGTGGCTGCGGCTGCTGTTGCTGCTG
CATCTGGTGTTGTAGCTGCTGTTGCTGCTGCATCTGCTGTTGTAACTGCT
GCTGTCGCTGCTGCTGCAGATATTGCTGGATCTGCCCCCCCCGGGCGTAC
GTCGGTGGCGGCTCCTGAAGAAGCTGTAACAGTTGCTGTTGACTCTGCAT
CTGGGGCGTTAAACAGGCCGAGGTGGGAGCACTGCTGTGGTGCTGCCCAA
AGTCCTGCACCGGCTGGGAGATGGGTGCTGCCGGCACCGAGTGCAGACGT
AGTGAACTGGGCGGCGCCTGGACGCGAGCACTTTGACGCTGACGCGGGAA
TGGCTGTGGCTGTTGCTGCGGCTGCTGCTGTGAAGCATTGCTGGCTGGTA
ACAGGTGCTGGCGGTTCGTGGGATTGGCCGCCGGACCAGGGCCATTCGCC
TGCGGTTCATTTAAGCAGTCAAGCAGCCGATTACAGTCCTCAGTCAGTTG
CTTGATATCTCTATCCAGTCTTTCAGATTCCCCCACCGGCACCGGCTCAG
TCAGGATGTTGATCTCCTGCTCCAGGACGAGCAGGCGCTTCTTGTTGTCC
CTCATTGC
MXO01376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7417-PA | 2496 | Tab2-RA | 1658..2090 | 854..422 | 2165 | 100 | Minus |
| CG7417-PA | 2496 | Tab2-RA | 2132..2493 | 380..19 | 1810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tab2-RB | 3305 | CG7417-RB | 2072..2911 | 858..19 | 4020 | 98.6 | Minus |
| Tab2-RA | 3249 | CG7417-RA | 2016..2855 | 858..19 | 4020 | 98.6 | Minus |
| Tab2-RC | 3081 | CG7417-RC | 2016..2742 | 858..132 | 3455 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19302941..19303630 | 708..19 | 3285 | 98.4 | Minus |
| 2R | 25286936 | 2R | 19302728..19302878 | 858..708 | 740 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 22:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2665 | 691..320 | 224 | 55.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2672 | 630..268 | 171 | 55 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6899..7078 | 453..268 | 141 | 55.4 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3340 | 683..584 | 134 | 64.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6844 | 676..583 | 129 | 65.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1168 | 698..580 | 126 | 62.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6822 | 670..584 | 112 | 65.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6695..6796 | 690..583 | 111 | 61.5 | Minus |
MXO01376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:01 Download gff for
MXO01376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7417-PA | 1654..2496 | 15..858 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:54 Download gff for
MXO01376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tab2-RA | 2016..2858 | 15..858 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:19 Download gff for
MXO01376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tab2-RA | 2016..2858 | 15..858 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:19 Download gff for
MXO01376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19302728..19302878 | 708..858 | 99 | -> | Minus |
| 2R | 19302942..19303633 | 15..707 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:54 Download gff for
MXO01376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15190233..15190383 | 708..858 | 99 | -> | Minus |
| arm_2R | 15190447..15191138 | 15..707 | 98 | | Minus |
MXO01376.5prime Sequence
822 bp (683 high quality bases) assembled on 2007-03-15
> MXO01376.5prime
CAGTCGACATGGCGGCTACACCACCAATGCCGCCCGGATCAAACACCCAT
CAATTGAATGGCAAAACAGTCGGCAAGGGGAACCCCCTAGCTGAGGCGAT
CAATCAGCACTTTCAGCGGAAGAAACAGAATCAGCACCAGAGTCCCAACC
CCAGTCCAAACCCGAATCCCAACAGTCCCGCCAGCCGCAGCGGGAGCTAT
GAGCAGCTGGAGCTGCTGGATCACGCAACGCATCCACAGCAACAACAGGA
AGCCAGCAGTGGCAAGGCCAAGCCGAGCTGCCATTGCACCAACATTAGTA
TTATGCACCTGTTTCATGAGATGAAGCAGGAGTTCCCCACGATACCCGAT
GCCATAGTGACGCAATGCGTCAATGAGAATTGCCATCTTCTCCCCCCCCC
CATCCAGATGTTGAGGAAGGAGCTCAAGCTTCATCCTATCCCAGTGCAGA
GCTATCCGGCAAAGGTGCTGCAGCAACAGCAGCAGCAACACCACCAGAAT
AGGCAGGCCAAGCCTCCCACGCCGCTCAAGCCGTCACGGATAGCACCACC
GCAGCCGGAAGCTGTGCTGAGCAATGGAGTGGCTACGCCGCCAGGTGTTG
GTAGCCCACATCCTGATACGCAGCCCAGGCCGCGACCCACGACGCTCAAT
CTGCAACGTCAGTTTAGCACTCAGCTGCAGCAAAAGATTATGCAGCGCCA
GCAGCGACAGCAGAGGGATCACCAGCCAGCCCAGCTGACGCCCACTTCCT
TGAGCAAGCCGCTACGCCGGGCACCGCCACTTCCGCCGCCACCCAAACCG
AAGCCCGGCAGCTTCTCCAACG
MXO01376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7417-PA | 2496 | Tab2-RA | 394..814 | 402..822 | 2055 | 99.5 | Plus |
| CG7417-PA | 2496 | Tab2-RA | 1..379 | 9..387 | 1895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tab2-RB | 3305 | CG7417-RB | 419..1232 | 9..822 | 3875 | 98.4 | Plus |
| Tab2-RC | 3081 | CG7417-RC | 363..1176 | 9..822 | 3875 | 98.4 | Plus |
| Tab2-RA | 3249 | CG7417-RA | 363..1176 | 9..822 | 3875 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19299200..19300013 | 9..822 | 3875 | 98.4 | Plus |
Blast to na_te.dros performed 2014-11-28 21:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2458 | 146..300 | 172 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6892 | 467..560 | 136 | 63.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 932..1073 | 422..562 | 132 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6829..6867 | 461..499 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6816 | 467..559 | 122 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2464 | 457..559 | 120 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6825 | 468..505 | 118 | 78.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7958..7993 | 471..506 | 117 | 80.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9402..9437 | 471..506 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2844 | 457..513 | 116 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1146 | 468..499 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2363 | 468..506 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6784 | 468..506 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6805 | 468..506 | 114 | 76.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1127..1171 | 468..511 | 114 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2441 | 468..506 | 113 | 78.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1132 | 470..506 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2380 | 471..505 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2483 | 463..506 | 112 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6916 | 468..560 | 112 | 60.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3310 | 440..493 | 111 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2351 | 467..506 | 110 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1144 | 467..506 | 110 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2374 | 468..496 | 109 | 86.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2852 | 457..506 | 108 | 70.6 | Plus |
MXO01376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:01 Download gff for
MXO01376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7417-PA | 1..814 | 9..822 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:21 Download gff for
MXO01376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tab2-RA | 363..1176 | 9..822 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:39 Download gff for
MXO01376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tab2-RA | 363..1176 | 9..822 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:39 Download gff for
MXO01376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19299200..19300013 | 9..822 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:21 Download gff for
MXO01376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15186705..15187518 | 9..822 | 98 | | Plus |
