Clone MXO01377 Report

Search the DGRC for MXO01377

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:77
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7154-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01377.3prime Sequence

850 bp (771 high quality bases) assembled on 2007-03-15

> MXO01377.3prime
ATGGTCTAGAAAGCTTGCGTCCAGCAACAGCTGAGCAACAATGCTGTTGT
CATCCGCCGGATTGGCAGAATGGAGGCCAGATCCGCTCTCGAGGAACTCG
CGCAGTTCGTTCTCCAGATCTCCACCGCCATGCTGTTCATCAGACTCGTC
GATCTCCATGGCCACAGGTTGCAACTGTGGCAGGGCCACCGGCTGTTGGA
GCAGCTCAGGCAGCTGGACGCGCGGAGAGACGGGTCGAGGTGGCGGCAAG
CCAGCATAGGACATGCCCATAGCTTTTCGCAAGGCATAGGGATCGGCGAT
GGCGGAAGGCGGCAACTTCTTAGCCAAATCGCTGATCTGCTGCGTCAATT
GCTGGGCGGTTTGGATCTCCTCCTGACCGGTTTTCTCCCCCCCACCCAGG
TGATTCGGCAAAGGCTGAAACAAACGATCGTGCTGCGCCACTCGCAGCTT
CTCGATTAGCGTCAAGTTTTGACTAAGATGCTCGTGCATGCGCCGATTAA
GCTCGTAGCTCTTCATTTCAGCCTCCATGCCGTCTAGGAAGCTCACATCG
ATGCCAAGTTCACCAAGAGACTGCAATCCCTTGAAGTCCACATGTGTGTT
TTTGTATTTTTCATATTCTTGCTCAATTTGGGCGGTGGTTTCCTGCTGGC
TGGAAGTTTCCTCCTCCTGTTTCAAACACTTTTCAATCTCACGCTGCTCG
TATGAATGAAGCTGCATGTTGTATAGTTCATCCAGGGATTTACTGTGCTC
TCCGTTGGTAAGAATATCCCAGCAACCATTTGCAATTGTGGTCCCGTAGT
TAGAGTCTTTGGTGAATTGTAAGATGCTCTCCGCATATTCCGCACTGGAG

MXO01377.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7154-PA 2586 CG7154-RA 2222..2580 380..22 1795 100 Minus
CG7154-PA 2586 CG7154-RA 1833..2208 769..394 1780 98.9 Minus
CG7154-PA 2586 CG7154-RA 1752..1828 850..774 385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7154-RA 2834 CG7154-RA 1878..2706 850..22 3920 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7785045..7785640 850..255 2740 97.3 Minus
2L 23513712 2L 7785700..7785933 255..22 1170 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:06:28 has no hits.

MXO01377.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:01 Download gff for MXO01377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7154-PA 1752..2586 18..850 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:47 Download gff for MXO01377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 1878..2709 19..850 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:47 Download gff for MXO01377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 1878..2709 19..850 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:47 Download gff for MXO01377.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7785701..7785936 19..254 99   Minus
2L 7785045..7785640 255..850 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:47 Download gff for MXO01377.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7785701..7785936 19..254 99   Minus
arm_2L 7785045..7785640 255..850 97 -> Minus

MXO01377.5prime Sequence

862 bp (770 high quality bases) assembled on 2007-03-15

> MXO01377.5prime
CAGTCGACATGGGCTCCTCCAAGAAGCACAAGAAAAACAAGTCGGAGCGA
CGCGAGAAATATGAAGAATACAGTCAGCACCAGGACCCGGCTCAGCTGCA
ACGAGGTCTAAAGCTTATCCTTAAGGTGGGCTCGAATGCCACGCCGGAGT
ACAGTGCCAATTCGCCAATGGTGGACGGAGGACCGCCCACAGCAGCCGAG
GCCATGATGTCGCCAGTCCCCGAGGAACTTCAAGATCACCAGGGTCATCG
CGAGCGCCACAAAAAGTCAAAGAAAAAAAAGAAGAAGAAGGATCGCGAGA
AGAAGCACAAACACCACAAGGAGAAACGGCACAGGAGCAGAGATAGACAT
CGGGACGCTGGATCGGACGAAGATATGATGGCCGGCGCTGACTTTGCCCC
CCGCAGTGGATTCGCCCCATCGTCTGTCGCTCAACCGGCCGCCGATCCCG
ATTCCAGCCAAGATGGATTTAGCTTTATGGACGATGATCAATCACAACCG
CTGCCAGAGAATATTTTGTTCTTCGCCGGCATCACCACGGATAACTCGCC
ATCAAACTGCCCCGTAACAAAGCCAATAGCTCCACGCAAGCTGGATGATA
TTCTGATGGGCTCTTCGCCCAACTCGTCGTCGTTGCAATCTTCCTCCCTG
GGTTTAATAGGCAGCAGTCCCACCAAGCCACTGCCCGACCTTTTAATACC
TTCACCGTCGACGCCAGGAGGAGCCAACTCCCTTAATGCCCTTACACCGA
AGGCTCTCGAGGCGCCAAAGACGCCCAGTAGTTCCAGTGAGTCGGGTAGA
GAGCCACGGAGCTGTGTGCTTCAGCTAAAGCAGCAGACATCGCCGTTAAA
CAAACTTCTGGA

MXO01377.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7154-PA 2586 CG7154-RA 395..854 403..862 2200 99.1 Plus
CG7154-PA 2586 CG7154-RA 1..384 9..392 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7154-RA 2834 CG7154-RA 127..980 9..862 4135 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7783297..7783921 65..689 3035 99 Plus
2L 23513712 2L 7783975..7784147 690..862 820 98.3 Plus
2L 23513712 2L 7782991..7783048 9..66 290 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:13:34 has no hits.

MXO01377.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:02 Download gff for MXO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7154-PA 1..853 9..861 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:01 Download gff for MXO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 127..979 9..861 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:54 Download gff for MXO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 127..979 9..861 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:54 Download gff for MXO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7782991..7783048 9..66 100 -> Plus
2L 7783299..7783921 67..689 99 -> Plus
2L 7783975..7784146 690..861 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:01 Download gff for MXO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7782991..7783048 9..66 100 -> Plus
arm_2L 7783299..7783921 67..689 99 -> Plus
arm_2L 7783975..7784146 690..861 98   Plus