MXO01377.3prime Sequence
850 bp (771 high quality bases) assembled on 2007-03-15
> MXO01377.3prime
ATGGTCTAGAAAGCTTGCGTCCAGCAACAGCTGAGCAACAATGCTGTTGT
CATCCGCCGGATTGGCAGAATGGAGGCCAGATCCGCTCTCGAGGAACTCG
CGCAGTTCGTTCTCCAGATCTCCACCGCCATGCTGTTCATCAGACTCGTC
GATCTCCATGGCCACAGGTTGCAACTGTGGCAGGGCCACCGGCTGTTGGA
GCAGCTCAGGCAGCTGGACGCGCGGAGAGACGGGTCGAGGTGGCGGCAAG
CCAGCATAGGACATGCCCATAGCTTTTCGCAAGGCATAGGGATCGGCGAT
GGCGGAAGGCGGCAACTTCTTAGCCAAATCGCTGATCTGCTGCGTCAATT
GCTGGGCGGTTTGGATCTCCTCCTGACCGGTTTTCTCCCCCCCACCCAGG
TGATTCGGCAAAGGCTGAAACAAACGATCGTGCTGCGCCACTCGCAGCTT
CTCGATTAGCGTCAAGTTTTGACTAAGATGCTCGTGCATGCGCCGATTAA
GCTCGTAGCTCTTCATTTCAGCCTCCATGCCGTCTAGGAAGCTCACATCG
ATGCCAAGTTCACCAAGAGACTGCAATCCCTTGAAGTCCACATGTGTGTT
TTTGTATTTTTCATATTCTTGCTCAATTTGGGCGGTGGTTTCCTGCTGGC
TGGAAGTTTCCTCCTCCTGTTTCAAACACTTTTCAATCTCACGCTGCTCG
TATGAATGAAGCTGCATGTTGTATAGTTCATCCAGGGATTTACTGTGCTC
TCCGTTGGTAAGAATATCCCAGCAACCATTTGCAATTGTGGTCCCGTAGT
TAGAGTCTTTGGTGAATTGTAAGATGCTCTCCGCATATTCCGCACTGGAG
MXO01377.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7154-PA | 2586 | CG7154-RA | 2222..2580 | 380..22 | 1795 | 100 | Minus |
CG7154-PA | 2586 | CG7154-RA | 1833..2208 | 769..394 | 1780 | 98.9 | Minus |
CG7154-PA | 2586 | CG7154-RA | 1752..1828 | 850..774 | 385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7154-RA | 2834 | CG7154-RA | 1878..2706 | 850..22 | 3920 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7785045..7785640 | 850..255 | 2740 | 97.3 | Minus |
2L | 23513712 | 2L | 7785700..7785933 | 255..22 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:06:28 has no hits.
MXO01377.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:01 Download gff for
MXO01377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7154-PA | 1752..2586 | 18..850 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:47 Download gff for
MXO01377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7154-RA | 1878..2709 | 19..850 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:47 Download gff for
MXO01377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7154-RA | 1878..2709 | 19..850 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:47 Download gff for
MXO01377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7785701..7785936 | 19..254 | 99 | | Minus |
2L | 7785045..7785640 | 255..850 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:47 Download gff for
MXO01377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7785701..7785936 | 19..254 | 99 | | Minus |
arm_2L | 7785045..7785640 | 255..850 | 97 | -> | Minus |
MXO01377.5prime Sequence
862 bp (770 high quality bases) assembled on 2007-03-15
> MXO01377.5prime
CAGTCGACATGGGCTCCTCCAAGAAGCACAAGAAAAACAAGTCGGAGCGA
CGCGAGAAATATGAAGAATACAGTCAGCACCAGGACCCGGCTCAGCTGCA
ACGAGGTCTAAAGCTTATCCTTAAGGTGGGCTCGAATGCCACGCCGGAGT
ACAGTGCCAATTCGCCAATGGTGGACGGAGGACCGCCCACAGCAGCCGAG
GCCATGATGTCGCCAGTCCCCGAGGAACTTCAAGATCACCAGGGTCATCG
CGAGCGCCACAAAAAGTCAAAGAAAAAAAAGAAGAAGAAGGATCGCGAGA
AGAAGCACAAACACCACAAGGAGAAACGGCACAGGAGCAGAGATAGACAT
CGGGACGCTGGATCGGACGAAGATATGATGGCCGGCGCTGACTTTGCCCC
CCGCAGTGGATTCGCCCCATCGTCTGTCGCTCAACCGGCCGCCGATCCCG
ATTCCAGCCAAGATGGATTTAGCTTTATGGACGATGATCAATCACAACCG
CTGCCAGAGAATATTTTGTTCTTCGCCGGCATCACCACGGATAACTCGCC
ATCAAACTGCCCCGTAACAAAGCCAATAGCTCCACGCAAGCTGGATGATA
TTCTGATGGGCTCTTCGCCCAACTCGTCGTCGTTGCAATCTTCCTCCCTG
GGTTTAATAGGCAGCAGTCCCACCAAGCCACTGCCCGACCTTTTAATACC
TTCACCGTCGACGCCAGGAGGAGCCAACTCCCTTAATGCCCTTACACCGA
AGGCTCTCGAGGCGCCAAAGACGCCCAGTAGTTCCAGTGAGTCGGGTAGA
GAGCCACGGAGCTGTGTGCTTCAGCTAAAGCAGCAGACATCGCCGTTAAA
CAAACTTCTGGA
MXO01377.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7154-PA | 2586 | CG7154-RA | 395..854 | 403..862 | 2200 | 99.1 | Plus |
CG7154-PA | 2586 | CG7154-RA | 1..384 | 9..392 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7154-RA | 2834 | CG7154-RA | 127..980 | 9..862 | 4135 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7783297..7783921 | 65..689 | 3035 | 99 | Plus |
2L | 23513712 | 2L | 7783975..7784147 | 690..862 | 820 | 98.3 | Plus |
2L | 23513712 | 2L | 7782991..7783048 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:34 has no hits.
MXO01377.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:02 Download gff for
MXO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7154-PA | 1..853 | 9..861 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:01 Download gff for
MXO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7154-RA | 127..979 | 9..861 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:54 Download gff for
MXO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7154-RA | 127..979 | 9..861 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:54 Download gff for
MXO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7782991..7783048 | 9..66 | 100 | -> | Plus |
2L | 7783299..7783921 | 67..689 | 99 | -> | Plus |
2L | 7783975..7784146 | 690..861 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:01 Download gff for
MXO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7782991..7783048 | 9..66 | 100 | -> | Plus |
arm_2L | 7783299..7783921 | 67..689 | 99 | -> | Plus |
arm_2L | 7783975..7784146 | 690..861 | 98 | | Plus |