Clone MXO01378 Report

Search the DGRC for MXO01378

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:78
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01378.3prime Sequence

737 bp (722 high quality bases) assembled on 2007-03-15

> MXO01378.3prime
ATGGTCTAGAAAGCTTGCCTCCATCTTCACCACTGTTTCCCGGTCAACGC
CGAACTTATGCATCGCATAGTTGGTCACATGCTGCTCATGTTGACCCAAG
AGGGCGGCAGTCTGCTGCTGCAGCTGTTGCTGCTGCTGCTGATGTCTCTG
GAAGGCGGCCAGTTCGTAGTGCTCGTCCAGCGATGCCGATCGGCTGAGCA
TTATCTCTCCATGTTGCTGCTGCTGATGCTGCTGCTGCTGTTGTTGCTGT
TGCGACTGATCCATCTCTTCCATCTTGATGAGAGCGGGCTGCTCATCCTC
CTCCGGAGTCAGGTAGTAGGGTGGGGAAGGTCTCGTGGGCTTGCACAGCG
TCATTCCGGCCTGGTGATACGGATTCTGCTTACCCCCCCCCCCTGCTGTG
ACTCAGGGACGATAATGAGAACGATGCCGTGGTCGGTGTTGAGGTGACCA
TAAGTCCCGCCGACGCTGTGGAGCAGTTGGCCTGGGAGGTGAGCGACAAG
GCCTCCGTCTTGATCGCCGCCGCTGCCGCCGCCGCTGCTGCTGCTGCTGC
CGCCGTAATGGAGTTCGGCAGCAGTTGGGCCAGCAACTGGTGGTCGCTGG
TGGAGCCGCTGTTGCTGCTGCTGCTCAGTTGCTGAGCTTGCAGATATTTC
TGTATAAGTTTGTTGTTATTCTCATTGCTACTACTATTGTTGTTGTTGTT
GTTGTTGAAGATCGAGCTGTTGTTTGTGTTGTTATTG

MXO01378.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3992-PB 3750 srp-RB 3387..3747 379..19 1780 99.7 Minus
CG3992-PA 3795 srp-RA 3432..3792 379..19 1780 99.7 Minus
CG3992-PD 2241 srp-RD 1878..2238 379..19 1780 99.7 Minus
CG3992-PB 3750 srp-RB 3030..3345 737..422 1530 99.3 Minus
CG3992-PA 3795 srp-RA 3075..3390 737..422 1530 99.3 Minus
CG3992-PD 2241 srp-RD 1521..1836 737..422 1530 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
srp-RF 3274 CG3992-RF 1976..2693 737..19 3315 97.5 Minus
srp-RE 3796 CG3992-RE 2498..3215 737..19 3315 97.5 Minus
srp-RD 3841 CG3992-RD 2543..3260 737..19 3315 97.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16002783..16003500 737..19 3290 97.5 Minus
Blast to na_te.dros performed 2014-11-28 19:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2938 724..80 315 54.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6702..6899 718..522 303 66.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6944 737..519 264 61.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6923 735..528 260 61.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2539 737..536 250 61.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2385..2534 737..587 229 63.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6886 692..514 198 60.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2733..2938 737..524 187 57.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6865 652..520 183 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6839 634..519 171 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2324..2466 653..522 165 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2523..2666 737..591 150 59.5 Minus
roo 9092 roo DM_ROO 9092bp 982..1163 730..546 144 57.9 Minus
roo 9092 roo DM_ROO 9092bp 1059..1157 691..590 133 61.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6437..6572 722..587 129 59.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1526..1591 653..589 120 66.7 Minus

MXO01378.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:02 Download gff for MXO01378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3992-PD 1521..2241 18..737 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:27 Download gff for MXO01378.3prime
Subject Subject Range Query Range Percent Splice Strand
srp-RD 2543..3265 13..737 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:34 Download gff for MXO01378.3prime
Subject Subject Range Query Range Percent Splice Strand
srp-RD 2543..3265 13..737 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:34 Download gff for MXO01378.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16002783..16003505 13..737 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:27 Download gff for MXO01378.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11828505..11829227 13..737 97   Minus

MXO01378.5prime Sequence

859 bp (726 high quality bases) assembled on 2007-03-15

> MXO01378.5prime
CAGTCGACATGCGGAACAACTTTGCCCCCTACAGCGTCTACACCGGAGGC
GGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTGGCAGCGGC
GGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAACATAGACG
AGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATGGCCACAGC
ACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACGCTAAAGGA
CTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCAGCAGCACC
ATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAACAACTTTAC
CACCAGCAACAGCAGCAGCAGCAGCAGCAACAACTTCTTCCCCCCCCCCC
CAACTCCACCAGTTCGGCGGGAGGAAACTCCCCGTCGTCCTCGCACGCAC
TGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCCAGCGTGAT
AGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAGCTCGGCAG
CAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTACTCAGACTG
CCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACACAAGCCCAT
CTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAGCAACACCA
GCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAATCAACACC
AGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTCTGCACCAC
TCGAGCTCCTCGGCGGCCACGGCGGCAGCGGTGGCTGCGGCAACGGCGGC
GGTCAATGG

MXO01378.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3992-PB 3750 srp-RB 1335..1793 401..859 2220 99.3 Plus
CG3992-PA 3795 srp-RA 1335..1793 401..859 2220 99.3 Plus
CG3992-PB 3750 srp-RB 963..1318 29..384 1780 100 Plus
CG3992-PA 3795 srp-RA 963..1318 29..384 1780 100 Plus
CG3992-PD 2241 srp-RD 1..239 621..859 1195 100 Plus
CG15319-PB 9831 nej-RB 1075..1109 354..388 150 97.1 Plus
CG1597-PA 2661 CG1597-RA 184..211 93..120 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
srp-RA 4459 CG3992-RA 1029..1879 9..859 4060 98.5 Plus
srp-RB 4414 CG3992-RB 1029..1879 9..859 4060 98.5 Plus
srp-RG 3377 CG3992-RG 968..1261 566..859 1470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15995168..15995724 9..565 2590 97.7 Plus
3R 32079331 3R 15999322..15999619 562..859 1490 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:08:35 has no hits.

MXO01378.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:02 Download gff for MXO01378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3992-PA 939..1793 1..859 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:42 Download gff for MXO01378.5prime
Subject Subject Range Query Range Percent Splice Strand
srp-RB 1025..1879 1..859 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:54 Download gff for MXO01378.5prime
Subject Subject Range Query Range Percent Splice Strand
srp-RB 1025..1879 1..859 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:54 Download gff for MXO01378.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15995164..15995724 1..565 96 -> Plus
3R 15999326..15999619 566..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:42 Download gff for MXO01378.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11820886..11821446 1..565 96 -> Plus
arm_3R 11825048..11825341 566..859 100   Plus