MXO01378.3prime Sequence
737 bp (722 high quality bases) assembled on 2007-03-15
> MXO01378.3prime
ATGGTCTAGAAAGCTTGCCTCCATCTTCACCACTGTTTCCCGGTCAACGC
CGAACTTATGCATCGCATAGTTGGTCACATGCTGCTCATGTTGACCCAAG
AGGGCGGCAGTCTGCTGCTGCAGCTGTTGCTGCTGCTGCTGATGTCTCTG
GAAGGCGGCCAGTTCGTAGTGCTCGTCCAGCGATGCCGATCGGCTGAGCA
TTATCTCTCCATGTTGCTGCTGCTGATGCTGCTGCTGCTGTTGTTGCTGT
TGCGACTGATCCATCTCTTCCATCTTGATGAGAGCGGGCTGCTCATCCTC
CTCCGGAGTCAGGTAGTAGGGTGGGGAAGGTCTCGTGGGCTTGCACAGCG
TCATTCCGGCCTGGTGATACGGATTCTGCTTACCCCCCCCCCCTGCTGTG
ACTCAGGGACGATAATGAGAACGATGCCGTGGTCGGTGTTGAGGTGACCA
TAAGTCCCGCCGACGCTGTGGAGCAGTTGGCCTGGGAGGTGAGCGACAAG
GCCTCCGTCTTGATCGCCGCCGCTGCCGCCGCCGCTGCTGCTGCTGCTGC
CGCCGTAATGGAGTTCGGCAGCAGTTGGGCCAGCAACTGGTGGTCGCTGG
TGGAGCCGCTGTTGCTGCTGCTGCTCAGTTGCTGAGCTTGCAGATATTTC
TGTATAAGTTTGTTGTTATTCTCATTGCTACTACTATTGTTGTTGTTGTT
GTTGTTGAAGATCGAGCTGTTGTTTGTGTTGTTATTG
MXO01378.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3992-PB | 3750 | srp-RB | 3387..3747 | 379..19 | 1780 | 99.7 | Minus |
CG3992-PA | 3795 | srp-RA | 3432..3792 | 379..19 | 1780 | 99.7 | Minus |
CG3992-PD | 2241 | srp-RD | 1878..2238 | 379..19 | 1780 | 99.7 | Minus |
CG3992-PB | 3750 | srp-RB | 3030..3345 | 737..422 | 1530 | 99.3 | Minus |
CG3992-PA | 3795 | srp-RA | 3075..3390 | 737..422 | 1530 | 99.3 | Minus |
CG3992-PD | 2241 | srp-RD | 1521..1836 | 737..422 | 1530 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
srp-RF | 3274 | CG3992-RF | 1976..2693 | 737..19 | 3315 | 97.5 | Minus |
srp-RE | 3796 | CG3992-RE | 2498..3215 | 737..19 | 3315 | 97.5 | Minus |
srp-RD | 3841 | CG3992-RD | 2543..3260 | 737..19 | 3315 | 97.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16002783..16003500 | 737..19 | 3290 | 97.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2938 | 724..80 | 315 | 54.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..6899 | 718..522 | 303 | 66.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6944 | 737..519 | 264 | 61.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6923 | 735..528 | 260 | 61.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2539 | 737..536 | 250 | 61.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2534 | 737..587 | 229 | 63.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6886 | 692..514 | 198 | 60.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2733..2938 | 737..524 | 187 | 57.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6865 | 652..520 | 183 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6839 | 634..519 | 171 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2466 | 653..522 | 165 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2523..2666 | 737..591 | 150 | 59.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 982..1163 | 730..546 | 144 | 57.9 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1157 | 691..590 | 133 | 61.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6437..6572 | 722..587 | 129 | 59.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1591 | 653..589 | 120 | 66.7 | Minus |
MXO01378.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:02 Download gff for
MXO01378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3992-PD | 1521..2241 | 18..737 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:27 Download gff for
MXO01378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srp-RD | 2543..3265 | 13..737 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:34 Download gff for
MXO01378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srp-RD | 2543..3265 | 13..737 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:34 Download gff for
MXO01378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16002783..16003505 | 13..737 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:27 Download gff for
MXO01378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11828505..11829227 | 13..737 | 97 | | Minus |
MXO01378.5prime Sequence
859 bp (726 high quality bases) assembled on 2007-03-15
> MXO01378.5prime
CAGTCGACATGCGGAACAACTTTGCCCCCTACAGCGTCTACACCGGAGGC
GGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTGGCAGCGGC
GGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAACATAGACG
AGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATGGCCACAGC
ACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACGCTAAAGGA
CTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCAGCAGCACC
ATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAACAACTTTAC
CACCAGCAACAGCAGCAGCAGCAGCAGCAACAACTTCTTCCCCCCCCCCC
CAACTCCACCAGTTCGGCGGGAGGAAACTCCCCGTCGTCCTCGCACGCAC
TGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCCAGCGTGAT
AGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAGCTCGGCAG
CAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTACTCAGACTG
CCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACACAAGCCCAT
CTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAGCAACACCA
GCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAATCAACACC
AGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTCTGCACCAC
TCGAGCTCCTCGGCGGCCACGGCGGCAGCGGTGGCTGCGGCAACGGCGGC
GGTCAATGG
MXO01378.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3992-PB | 3750 | srp-RB | 1335..1793 | 401..859 | 2220 | 99.3 | Plus |
CG3992-PA | 3795 | srp-RA | 1335..1793 | 401..859 | 2220 | 99.3 | Plus |
CG3992-PB | 3750 | srp-RB | 963..1318 | 29..384 | 1780 | 100 | Plus |
CG3992-PA | 3795 | srp-RA | 963..1318 | 29..384 | 1780 | 100 | Plus |
CG3992-PD | 2241 | srp-RD | 1..239 | 621..859 | 1195 | 100 | Plus |
CG15319-PB | 9831 | nej-RB | 1075..1109 | 354..388 | 150 | 97.1 | Plus |
CG1597-PA | 2661 | CG1597-RA | 184..211 | 93..120 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
srp-RA | 4459 | CG3992-RA | 1029..1879 | 9..859 | 4060 | 98.5 | Plus |
srp-RB | 4414 | CG3992-RB | 1029..1879 | 9..859 | 4060 | 98.5 | Plus |
srp-RG | 3377 | CG3992-RG | 968..1261 | 566..859 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15995168..15995724 | 9..565 | 2590 | 97.7 | Plus |
3R | 32079331 | 3R | 15999322..15999619 | 562..859 | 1490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:08:35 has no hits.
MXO01378.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:02 Download gff for
MXO01378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3992-PA | 939..1793 | 1..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:42 Download gff for
MXO01378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srp-RB | 1025..1879 | 1..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:54 Download gff for
MXO01378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srp-RB | 1025..1879 | 1..859 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:54 Download gff for
MXO01378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15995164..15995724 | 1..565 | 96 | -> | Plus |
3R | 15999326..15999619 | 566..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:42 Download gff for
MXO01378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11820886..11821446 | 1..565 | 96 | -> | Plus |
arm_3R | 11825048..11825341 | 566..859 | 100 | | Plus |