MXO01380.3prime Sequence
724 bp (722 high quality bases) assembled on 2007-03-15
> MXO01380.3prime
ATGGTCTAGAAAGCTTGCATTTCCAAGCAATCCAATCGCCGTTGTCGCTG
TATCTCCGCCCCACTCCACCAGGTACTGGACCTGTCCATTTCCCATGCGC
CGCTTGGCCCGAATGGCAAAGGGCTCACCAGCATCTATGCGATTCATAGC
GCCACCAAAGTACTTGTTCACCGACTGCTTCAAGTCCAGCATGGAATGTC
CTGGGGCTCCAATGCCGTTGCTGCTGCTGCTGGTTGCCGTCGAGCTGGTG
GAGTTCCGGCGGCTTTGGCTGGGTGACTGCTTCTGTGGTCGCTGGCGCAA
CAGGCGCCCATGTGTCGGCTTTCCCATTGGCGGCGCGGGTGGCTGCAGAT
CTTTGGCATAGATAGGAAGGTAGTGGCTGGTTATGGCACTCATGGTGGTG
GTGCTGATGACCTCAATGAACATGGTCAGGCGGCGAGTGCGTCGTCTGCG
CACTTCCTGATTGGGCCCTATCGTAATGTCTTTGGCACTCAGTCTTCGCT
TGATGGTGCGCACCATGCGCGGCTGCTCCTTGGAGGTGCCCTTAAGCTTG
AAAATGCTGTTTATGATGCCATTTACTCCGACTCCAGTTCCCACAGAAAT
ACTTCGTCCCTGCGACGCCTTTTTGGGAGTGGCCATAAGGAATGGATTGT
TGCGTCCCAAAAAGTTGACCGGCGGTGGTATGATGAGGTCCAACGAACTG
GTTCCCCGACTGCTGCTTGAATTC
MXO01380.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5109-PA | 3132 | Pcl-RA | 2730..3129 | 418..19 | 1900 | 99 | Minus |
CG5109-PA | 3132 | Pcl-RA | 2424..2725 | 724..423 | 1510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcl-RB | 4384 | CG5109-RB | 2922..3627 | 724..19 | 3425 | 99 | Minus |
Pcl-RA | 3836 | CG5109-RA | 2922..3627 | 724..19 | 3425 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18138839..18139233 | 413..19 | 1915 | 99 | Minus |
2R | 25286936 | 2R | 18138461..18138775 | 724..410 | 1530 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 20:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6825 | 294..199 | 142 | 66 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6792 | 281..213 | 130 | 70.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6771 | 266..213 | 116 | 72.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1576 | 272..213 | 111 | 65 | Minus |
MXO01380.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:04 Download gff for
MXO01380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5109-PA | 2424..3132 | 16..724 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:01 Download gff for
MXO01380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcl-RA | 2922..3636 | 10..724 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:39 Download gff for
MXO01380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcl-RA | 2922..3636 | 10..724 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:39 Download gff for
MXO01380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18138461..18138773 | 412..724 | 99 | -> | Minus |
2R | 18138841..18139242 | 10..411 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:01 Download gff for
MXO01380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14025966..14026278 | 412..724 | 99 | -> | Minus |
arm_2R | 14026346..14026747 | 10..411 | 98 | | Minus |
MXO01380.5prime Sequence
858 bp (839 high quality bases) assembled on 2007-03-15
> MXO01380.5prime
CAGTCGACATGATGAACAACCATTTTCACTTGCAACACGATCATCCACCG
CAGAACGTGGCACATCCGTTCATGCAACAGCCGAGTACCGCTGTCCCATC
AGCTCCTCCGGCCACCTACGGCTACTTAGCACAGCCAGCTGGCCAGCAGC
CGCAGTGGATGACCACCACCTACCAGATCCTGCCGCCCAGCGTAGGACCT
GCCACGGTGGCCAAGCGATACTATGCCACCACTGGGCCGCAGACCACGCA
TCCCACACATCCCAGCACCATCCAGATCACGAACAGTTTCGCTCAGCAAT
CAACGCCACCGAAGCAACAGGCGGCAACAAGCTGCAGCCCATTCAAGGCC
AACAACATCCGAATCATCTCGACGGCGCCAAGTGTATACTCTCTCCCCCC
CCCGCCACAGGAAGCGCACTCCACATATGCTCCCGTTCAGTCGTACTACT
TGCCCAGTGGCGGTGGCCAAACTGCGGGACAAATCAATCTACTGGCGGCC
AGCGGAACTGGCAAGCAACTGCAGCCGCCGCCGCTGGTGCCTGTGACCAA
TTCCACCTCACCGCCCTCCACCGTCGTGTTAGACCGCATAAACATTTGCA
TCAATAACCACTATACGGAGACGCCCACTTCGCTAAGTTCATCGCTTACC
ACGGCCCAACAACCTTCGCCCATCATACCGGCCATCCAGCACAAGGCCAT
CCTGCCCCTCATCGACAGCAGCACGGCGGATAGCAGCAGCTGCAGCAGCA
GTTCTGTATCGAGCAGCAGTTATAGTGGTACCGCGACCACCTCAGCAGCA
GTTGTGATTGTGGATGAGCCGGATTCAACGACCACAACGCCACAGACACC
GCCCACTA
MXO01380.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5109-PA | 3132 | Pcl-RA | 394..845 | 402..853 | 2210 | 99.5 | Plus |
CG5109-PA | 3132 | Pcl-RA | 1..381 | 9..389 | 1855 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcl-RB | 4384 | CG5109-RB | 499..1348 | 9..858 | 4040 | 98.4 | Plus |
Pcl-RA | 3836 | CG5109-RA | 499..1348 | 9..858 | 4040 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18135924..18136773 | 9..858 | 4040 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:40:29 has no hits.
MXO01380.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:04 Download gff for
MXO01380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5109-PA | 1..849 | 9..857 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:38 Download gff for
MXO01380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcl-RA | 491..1347 | 1..857 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:32 Download gff for
MXO01380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcl-RA | 491..1347 | 1..857 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:32 Download gff for
MXO01380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18135916..18136772 | 1..857 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:38 Download gff for
MXO01380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14023421..14024277 | 1..857 | 98 | | Plus |