Clone MXO01380 Report

Search the DGRC for MXO01380

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:80
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptPcl-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01380.3prime Sequence

724 bp (722 high quality bases) assembled on 2007-03-15

> MXO01380.3prime
ATGGTCTAGAAAGCTTGCATTTCCAAGCAATCCAATCGCCGTTGTCGCTG
TATCTCCGCCCCACTCCACCAGGTACTGGACCTGTCCATTTCCCATGCGC
CGCTTGGCCCGAATGGCAAAGGGCTCACCAGCATCTATGCGATTCATAGC
GCCACCAAAGTACTTGTTCACCGACTGCTTCAAGTCCAGCATGGAATGTC
CTGGGGCTCCAATGCCGTTGCTGCTGCTGCTGGTTGCCGTCGAGCTGGTG
GAGTTCCGGCGGCTTTGGCTGGGTGACTGCTTCTGTGGTCGCTGGCGCAA
CAGGCGCCCATGTGTCGGCTTTCCCATTGGCGGCGCGGGTGGCTGCAGAT
CTTTGGCATAGATAGGAAGGTAGTGGCTGGTTATGGCACTCATGGTGGTG
GTGCTGATGACCTCAATGAACATGGTCAGGCGGCGAGTGCGTCGTCTGCG
CACTTCCTGATTGGGCCCTATCGTAATGTCTTTGGCACTCAGTCTTCGCT
TGATGGTGCGCACCATGCGCGGCTGCTCCTTGGAGGTGCCCTTAAGCTTG
AAAATGCTGTTTATGATGCCATTTACTCCGACTCCAGTTCCCACAGAAAT
ACTTCGTCCCTGCGACGCCTTTTTGGGAGTGGCCATAAGGAATGGATTGT
TGCGTCCCAAAAAGTTGACCGGCGGTGGTATGATGAGGTCCAACGAACTG
GTTCCCCGACTGCTGCTTGAATTC

MXO01380.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5109-PA 3132 Pcl-RA 2730..3129 418..19 1900 99 Minus
CG5109-PA 3132 Pcl-RA 2424..2725 724..423 1510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 4384 CG5109-RB 2922..3627 724..19 3425 99 Minus
Pcl-RA 3836 CG5109-RA 2922..3627 724..19 3425 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18138839..18139233 413..19 1915 99 Minus
2R 25286936 2R 18138461..18138775 724..410 1530 99 Minus
Blast to na_te.dros performed 2014-11-28 20:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6825 294..199 142 66 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6792 281..213 130 70.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6771 266..213 116 72.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1576 272..213 111 65 Minus

MXO01380.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:04 Download gff for MXO01380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5109-PA 2424..3132 16..724 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:01 Download gff for MXO01380.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 2922..3636 10..724 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:39 Download gff for MXO01380.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 2922..3636 10..724 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:39 Download gff for MXO01380.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18138461..18138773 412..724 99 -> Minus
2R 18138841..18139242 10..411 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:01 Download gff for MXO01380.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14025966..14026278 412..724 99 -> Minus
arm_2R 14026346..14026747 10..411 98   Minus

MXO01380.5prime Sequence

858 bp (839 high quality bases) assembled on 2007-03-15

> MXO01380.5prime
CAGTCGACATGATGAACAACCATTTTCACTTGCAACACGATCATCCACCG
CAGAACGTGGCACATCCGTTCATGCAACAGCCGAGTACCGCTGTCCCATC
AGCTCCTCCGGCCACCTACGGCTACTTAGCACAGCCAGCTGGCCAGCAGC
CGCAGTGGATGACCACCACCTACCAGATCCTGCCGCCCAGCGTAGGACCT
GCCACGGTGGCCAAGCGATACTATGCCACCACTGGGCCGCAGACCACGCA
TCCCACACATCCCAGCACCATCCAGATCACGAACAGTTTCGCTCAGCAAT
CAACGCCACCGAAGCAACAGGCGGCAACAAGCTGCAGCCCATTCAAGGCC
AACAACATCCGAATCATCTCGACGGCGCCAAGTGTATACTCTCTCCCCCC
CCCGCCACAGGAAGCGCACTCCACATATGCTCCCGTTCAGTCGTACTACT
TGCCCAGTGGCGGTGGCCAAACTGCGGGACAAATCAATCTACTGGCGGCC
AGCGGAACTGGCAAGCAACTGCAGCCGCCGCCGCTGGTGCCTGTGACCAA
TTCCACCTCACCGCCCTCCACCGTCGTGTTAGACCGCATAAACATTTGCA
TCAATAACCACTATACGGAGACGCCCACTTCGCTAAGTTCATCGCTTACC
ACGGCCCAACAACCTTCGCCCATCATACCGGCCATCCAGCACAAGGCCAT
CCTGCCCCTCATCGACAGCAGCACGGCGGATAGCAGCAGCTGCAGCAGCA
GTTCTGTATCGAGCAGCAGTTATAGTGGTACCGCGACCACCTCAGCAGCA
GTTGTGATTGTGGATGAGCCGGATTCAACGACCACAACGCCACAGACACC
GCCCACTA

MXO01380.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5109-PA 3132 Pcl-RA 394..845 402..853 2210 99.5 Plus
CG5109-PA 3132 Pcl-RA 1..381 9..389 1855 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 4384 CG5109-RB 499..1348 9..858 4040 98.4 Plus
Pcl-RA 3836 CG5109-RA 499..1348 9..858 4040 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18135924..18136773 9..858 4040 98.4 Plus
Blast to na_te.dros performed on 2014-11-28 18:40:29 has no hits.

MXO01380.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:04 Download gff for MXO01380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5109-PA 1..849 9..857 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:38 Download gff for MXO01380.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 491..1347 1..857 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:32 Download gff for MXO01380.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 491..1347 1..857 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:32 Download gff for MXO01380.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18135916..18136772 1..857 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:38 Download gff for MXO01380.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14023421..14024277 1..857 98   Plus