Clone Sequence Records
MXO01381.3prime Sequence
868 bp (710 high quality bases) assembled on 2007-03-15
> MXO01381.3prime
ATGGTCTAGAAAGCTTGCACTACGCTCCGGCGTCCCGTGGTGCTGATAGA
TCTGCTGAAGCTGCTGCTGCTGTTGGCTGTGCACCACCTGGCTGCTCGAT
GTAACCACGTCCTGCTGCATATGCTGCGGATGGTGGCCCGGATGGGGCGA
CTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCATGTGCACCACGTGCTGCT
GCATGTGCTGCGGCGTCGGCGGACCCTGCTGCGCCGAGCTGTGGTGCTGC
GGCGTGCTGTGATGCTGCGGCGTTGGCGGATGCGGCGACGGACTATACGG
GAACTGTTGCTGTAACATATGCAACGAATTCTCCTGACTGTGCTCGATAA
TCTCAATGCTGCCGGTGGTGTTGCCCGAGGTGTTCAATACCGCCACGCCA
CTCGTGTTGGCCACCACGTCGTATTTGCCGCGCTTGAAGCGGCCGTAGAG
CGAGCTGTAGGGCAGGTTATAGTGAATGGCCGCCTGGTTGATGGACATTT
GGCCAACGCGCACTGAGTTCAGGGCCTCGTTCATGGCATCCTCGGACCAG
GGTGTTGGATTCGAACGCGACAGCTCAATGCCCTCCCGTTTGCAGCGTCC
GTAAAGTGTTCCTGTGGGTATGCCAAACTCAGCGCTGGCTTTCTGCACCG
AAGTATTACCCGCCCGTATCGCCTCCAAGGCGCGCTCCAGATCCTCGGGC
GTCCACGTGGTCGGGGCGGCATTGAAGGGCGCCGCAAGGCGGATGCCTTC
GCGCCGTGCAATCTTGTAGAGCGTCGAGGATGGGATGCCGAAGGCCTTTG
ACGCTTTGTTCGCGGATATCTGACCCGAACGCAACGCCTCCAAAGCATTC
TGCAGGGCATCCTCGTTC
MXO01381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2368-PC | 3195 | psq-RC | 2343..3192 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PA | 3141 | psq-RA | 2289..3138 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PI | 1920 | psq-RI | 1068..1917 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PJ | 1920 | psq-RJ | 1068..1917 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PK | 1920 | psq-RK | 1068..1917 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PH | 1938 | psq-RH | 1086..1935 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PG | 1938 | psq-RG | 1086..1935 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PD | 1938 | psq-RD | 1086..1935 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PF | 1938 | psq-RF | 1086..1935 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PB | 3195 | psq-RB | 2343..3192 | 868..19 | 4175 | 99.6 | Minus |
CG2368-PE | 1938 | psq-RE | 1086..1935 | 868..19 | 4175 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
psq-RK | 4640 | CG2368-RK | 2381..3230 | 868..19 | 4205 | 99.6 | Minus |
psq-RB | 5367 | CG2368-RB | 3108..3957 | 868..19 | 4205 | 99.6 | Minus |
psq-RF | 4780 | CG2368-RF | 2521..3370 | 868..19 | 4205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10614532..10614838 | 325..19 | 1535 | 100 | Minus |
2R | 25286936 | 2R | 10613119..10613376 | 868..611 | 1260 | 99.2 | Minus |
2R | 25286936 | 2R | 10613942..10614126 | 509..325 | 910 | 99.5 | Minus |
2R | 25286936 | 2R | 10613766..10613870 | 613..509 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:06:39 has no hits.
MXO01381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:05 Download gff for
MXO01381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2368-PE | 1086..1938 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:56 Download gff for
MXO01381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psq-RF | 2521..3370 | 19..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:53 Download gff for
MXO01381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psq-RF | 2521..3370 | 19..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:53 Download gff for
MXO01381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10613119..10613375 | 612..868 | 99 | -> | Minus |
2R | 10613768..10613870 | 509..611 | 100 | -> | Minus |
2R | 10613943..10614126 | 325..508 | 99 | -> | Minus |
2R | 10614533..10614838 | 19..324 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:56 Download gff for
MXO01381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6500624..6500880 | 612..868 | 99 | -> | Minus |
arm_2R | 6501273..6501375 | 509..611 | 100 | -> | Minus |
arm_2R | 6501448..6501631 | 325..508 | 99 | -> | Minus |
arm_2R | 6502038..6502343 | 19..324 | 100 | | Minus |
MXO01381.5prime Sequence
874 bp (721 high quality bases) assembled on 2007-03-15
> MXO01381.5prime
CAGTCGACATGGCAGCGGTTCGAGGACATCAGTATTTCAGTCTGCGCTGG
AATAACTACCAGAACACGATGACGTCCGTGTTTCAGCAGCTGCGCGAGGA
TCTCTCCTTTGTGGACGTCACTCTGTCCTGCGAGCATGGATCCCTCAAGG
CGCACAAGGTCGTCCTGTCCGCCTGTTCGACGTATTTCCAAAAACTACTG
CTCGAGAATCCGTGCAAACATCCCACAATTATCCTTCCCGCCGACATTAT
CTTCACCGACCTGAAAACGATCATCGATTTTGTTTATCGTGGTGAAATCG
ACGTCACCGAATCGGAATTACAGGGCCTCTTGCGCACCGCCGAGCAGCTA
AAGATCAAGGGACTCTGCGAAACCGCCGAGAACGCGTATGACCCGCCCGA
CGCGGCCACTGCAACGATCACAGATTCAGAGAACATACAGCAGGCGGTCG
TTGGCAATATAGTGAACGCCGCCATAGTTCCCGGAGCTCCGTCGCCCTCC
TTGGAACAGCAGCAGCAACACCACCAACAGCAGCAACAGCAGCAGGCGCA
GGAGCAGCACCAGCAACAGCAGGTGCATGCCCAGCAGCAACAGCAGCAGC
AGCAGCAAATAAACGCTGCCCTGCTTACGCAACACGGAGTGTCCAGCGGA
AGTGTATCTCTTTCCGGGCAATTGCTGAGCTCCTCGGCTAGCGGCAGCAG
CGGAAGTTTAGCCGGCGGACAGCAGGCATCACAGACGCCATCCGGTTTGC
AGCCGACGCCGCGCAAGTCTCGACTAAAGCGCTCCAAATCGCCAGATTTG
TCATCGGGCGGAGGAGCAGGAAGCTCTGGAGGCTCAAGTAGCGGCTCAAC
GCAGCAGCAACCGCAGCCGGGCGC
MXO01381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2368-PC | 3195 | psq-RC | 390..862 | 398..870 | 2340 | 99.7 | Plus |
CG2368-PA | 3141 | psq-RA | 390..862 | 398..870 | 2340 | 99.7 | Plus |
CG2368-PL | 1608 | psq-RL | 390..862 | 398..870 | 2340 | 99.7 | Plus |
CG2368-PB | 3195 | psq-RB | 390..862 | 398..870 | 2340 | 99.7 | Plus |
CG2368-PC | 3195 | psq-RC | 1..385 | 9..393 | 1900 | 99.7 | Plus |
CG2368-PA | 3141 | psq-RA | 1..385 | 9..393 | 1900 | 99.7 | Plus |
CG2368-PL | 1608 | psq-RL | 1..385 | 9..393 | 1900 | 99.7 | Plus |
CG2368-PB | 3195 | psq-RB | 1..385 | 9..393 | 1900 | 99.7 | Plus |
CG8367-PB | 2319 | cg-RB | 2033..2073 | 505..545 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
psq-RN | 6336 | CG2368-RN | 762..1627 | 5..870 | 4240 | 99.3 | Plus |
psq-RM | 6336 | CG2368-RM | 762..1627 | 5..870 | 4240 | 99.3 | Plus |
psq-RB | 5367 | CG2368-RB | 762..1627 | 5..870 | 4240 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10610544..10611096 | 318..870 | 2690 | 99.1 | Plus |
2R | 25286936 | 2R | 10562024..10562191 | 157..324 | 840 | 100 | Plus |
2R | 25286936 | 2R | 10561801..10561956 | 5..160 | 765 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:03:06 has no hits.
MXO01381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:05 Download gff for
MXO01381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2368-PA | 1..865 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:55 Download gff for
MXO01381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psq-RC | 474..1346 | 1..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:21 Download gff for
MXO01381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psq-RB | 758..1630 | 1..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:21 Download gff for
MXO01381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10561797..10561954 | 1..158 | 98 | -> | Plus |
2R | 10562026..10562190 | 159..323 | 100 | -> | Plus |
2R | 10610550..10611099 | 324..874 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:55 Download gff for
MXO01381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6449302..6449459 | 1..158 | 98 | -> | Plus |
arm_2R | 6449531..6449695 | 159..323 | 100 | -> | Plus |
arm_2R | 6498055..6498604 | 324..874 | 98 | | Plus |