Clone MXO01381 Report

Search the DGRC for MXO01381

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:81
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptpsq-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01381.3prime Sequence

868 bp (710 high quality bases) assembled on 2007-03-15

> MXO01381.3prime
ATGGTCTAGAAAGCTTGCACTACGCTCCGGCGTCCCGTGGTGCTGATAGA
TCTGCTGAAGCTGCTGCTGCTGTTGGCTGTGCACCACCTGGCTGCTCGAT
GTAACCACGTCCTGCTGCATATGCTGCGGATGGTGGCCCGGATGGGGCGA
CTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCATGTGCACCACGTGCTGCT
GCATGTGCTGCGGCGTCGGCGGACCCTGCTGCGCCGAGCTGTGGTGCTGC
GGCGTGCTGTGATGCTGCGGCGTTGGCGGATGCGGCGACGGACTATACGG
GAACTGTTGCTGTAACATATGCAACGAATTCTCCTGACTGTGCTCGATAA
TCTCAATGCTGCCGGTGGTGTTGCCCGAGGTGTTCAATACCGCCACGCCA
CTCGTGTTGGCCACCACGTCGTATTTGCCGCGCTTGAAGCGGCCGTAGAG
CGAGCTGTAGGGCAGGTTATAGTGAATGGCCGCCTGGTTGATGGACATTT
GGCCAACGCGCACTGAGTTCAGGGCCTCGTTCATGGCATCCTCGGACCAG
GGTGTTGGATTCGAACGCGACAGCTCAATGCCCTCCCGTTTGCAGCGTCC
GTAAAGTGTTCCTGTGGGTATGCCAAACTCAGCGCTGGCTTTCTGCACCG
AAGTATTACCCGCCCGTATCGCCTCCAAGGCGCGCTCCAGATCCTCGGGC
GTCCACGTGGTCGGGGCGGCATTGAAGGGCGCCGCAAGGCGGATGCCTTC
GCGCCGTGCAATCTTGTAGAGCGTCGAGGATGGGATGCCGAAGGCCTTTG
ACGCTTTGTTCGCGGATATCTGACCCGAACGCAACGCCTCCAAAGCATTC
TGCAGGGCATCCTCGTTC

MXO01381.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2368-PC 3195 psq-RC 2343..3192 868..19 4175 99.6 Minus
CG2368-PA 3141 psq-RA 2289..3138 868..19 4175 99.6 Minus
CG2368-PI 1920 psq-RI 1068..1917 868..19 4175 99.6 Minus
CG2368-PJ 1920 psq-RJ 1068..1917 868..19 4175 99.6 Minus
CG2368-PK 1920 psq-RK 1068..1917 868..19 4175 99.6 Minus
CG2368-PH 1938 psq-RH 1086..1935 868..19 4175 99.6 Minus
CG2368-PG 1938 psq-RG 1086..1935 868..19 4175 99.6 Minus
CG2368-PD 1938 psq-RD 1086..1935 868..19 4175 99.6 Minus
CG2368-PF 1938 psq-RF 1086..1935 868..19 4175 99.6 Minus
CG2368-PB 3195 psq-RB 2343..3192 868..19 4175 99.6 Minus
CG2368-PE 1938 psq-RE 1086..1935 868..19 4175 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
psq-RK 4640 CG2368-RK 2381..3230 868..19 4205 99.6 Minus
psq-RB 5367 CG2368-RB 3108..3957 868..19 4205 99.6 Minus
psq-RF 4780 CG2368-RF 2521..3370 868..19 4205 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10614532..10614838 325..19 1535 100 Minus
2R 25286936 2R 10613119..10613376 868..611 1260 99.2 Minus
2R 25286936 2R 10613942..10614126 509..325 910 99.5 Minus
2R 25286936 2R 10613766..10613870 613..509 525 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:06:39 has no hits.

MXO01381.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:05 Download gff for MXO01381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2368-PE 1086..1938 16..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:56 Download gff for MXO01381.3prime
Subject Subject Range Query Range Percent Splice Strand
psq-RF 2521..3370 19..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:53 Download gff for MXO01381.3prime
Subject Subject Range Query Range Percent Splice Strand
psq-RF 2521..3370 19..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:53 Download gff for MXO01381.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10613119..10613375 612..868 99 -> Minus
2R 10613768..10613870 509..611 100 -> Minus
2R 10613943..10614126 325..508 99 -> Minus
2R 10614533..10614838 19..324 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:56 Download gff for MXO01381.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6500624..6500880 612..868 99 -> Minus
arm_2R 6501273..6501375 509..611 100 -> Minus
arm_2R 6501448..6501631 325..508 99 -> Minus
arm_2R 6502038..6502343 19..324 100   Minus

MXO01381.5prime Sequence

874 bp (721 high quality bases) assembled on 2007-03-15

> MXO01381.5prime
CAGTCGACATGGCAGCGGTTCGAGGACATCAGTATTTCAGTCTGCGCTGG
AATAACTACCAGAACACGATGACGTCCGTGTTTCAGCAGCTGCGCGAGGA
TCTCTCCTTTGTGGACGTCACTCTGTCCTGCGAGCATGGATCCCTCAAGG
CGCACAAGGTCGTCCTGTCCGCCTGTTCGACGTATTTCCAAAAACTACTG
CTCGAGAATCCGTGCAAACATCCCACAATTATCCTTCCCGCCGACATTAT
CTTCACCGACCTGAAAACGATCATCGATTTTGTTTATCGTGGTGAAATCG
ACGTCACCGAATCGGAATTACAGGGCCTCTTGCGCACCGCCGAGCAGCTA
AAGATCAAGGGACTCTGCGAAACCGCCGAGAACGCGTATGACCCGCCCGA
CGCGGCCACTGCAACGATCACAGATTCAGAGAACATACAGCAGGCGGTCG
TTGGCAATATAGTGAACGCCGCCATAGTTCCCGGAGCTCCGTCGCCCTCC
TTGGAACAGCAGCAGCAACACCACCAACAGCAGCAACAGCAGCAGGCGCA
GGAGCAGCACCAGCAACAGCAGGTGCATGCCCAGCAGCAACAGCAGCAGC
AGCAGCAAATAAACGCTGCCCTGCTTACGCAACACGGAGTGTCCAGCGGA
AGTGTATCTCTTTCCGGGCAATTGCTGAGCTCCTCGGCTAGCGGCAGCAG
CGGAAGTTTAGCCGGCGGACAGCAGGCATCACAGACGCCATCCGGTTTGC
AGCCGACGCCGCGCAAGTCTCGACTAAAGCGCTCCAAATCGCCAGATTTG
TCATCGGGCGGAGGAGCAGGAAGCTCTGGAGGCTCAAGTAGCGGCTCAAC
GCAGCAGCAACCGCAGCCGGGCGC

MXO01381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2368-PC 3195 psq-RC 390..862 398..870 2340 99.7 Plus
CG2368-PA 3141 psq-RA 390..862 398..870 2340 99.7 Plus
CG2368-PL 1608 psq-RL 390..862 398..870 2340 99.7 Plus
CG2368-PB 3195 psq-RB 390..862 398..870 2340 99.7 Plus
CG2368-PC 3195 psq-RC 1..385 9..393 1900 99.7 Plus
CG2368-PA 3141 psq-RA 1..385 9..393 1900 99.7 Plus
CG2368-PL 1608 psq-RL 1..385 9..393 1900 99.7 Plus
CG2368-PB 3195 psq-RB 1..385 9..393 1900 99.7 Plus
CG8367-PB 2319 cg-RB 2033..2073 505..545 155 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
psq-RN 6336 CG2368-RN 762..1627 5..870 4240 99.3 Plus
psq-RM 6336 CG2368-RM 762..1627 5..870 4240 99.3 Plus
psq-RB 5367 CG2368-RB 762..1627 5..870 4240 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10610544..10611096 318..870 2690 99.1 Plus
2R 25286936 2R 10562024..10562191 157..324 840 100 Plus
2R 25286936 2R 10561801..10561956 5..160 765 99.4 Plus
Blast to na_te.dros performed on 2014-11-28 22:03:06 has no hits.

MXO01381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:05 Download gff for MXO01381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2368-PA 1..865 9..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:55 Download gff for MXO01381.5prime
Subject Subject Range Query Range Percent Splice Strand
psq-RC 474..1346 1..874 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:21 Download gff for MXO01381.5prime
Subject Subject Range Query Range Percent Splice Strand
psq-RB 758..1630 1..874 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:21 Download gff for MXO01381.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10561797..10561954 1..158 98 -> Plus
2R 10562026..10562190 159..323 100 -> Plus
2R 10610550..10611099 324..874 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:55 Download gff for MXO01381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6449302..6449459 1..158 98 -> Plus
arm_2R 6449531..6449695 159..323 100 -> Plus
arm_2R 6498055..6498604 324..874 98   Plus