Clone Sequence Records
MXO01382.3prime Sequence
776 bp (752 high quality bases) assembled on 2007-03-15
> MXO01382.3prime
ATGGTCTAGAAAGCTTGCACTACGCTCCGGCGTCCCGTGGTGCTGATAGA
TCTGCTGAAGCTGCTGCTGCTGTTGGCTGTGCACCACCTGGCTGCTCGAT
GTAACCACGTCCTGCTGCATATGCTGCGGATGGTGGCCCGGATGGGGCGA
CTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCATGTGCACCACGTGCTGCT
GCATGTGCTGCGGCGTCGGCGGACCCTGCTGCGCCGAGCTGTGGTGCTGC
GGCGTGCTGTGATGCTGCGGCGTTGGCGGATGCGGCGACGGACTATACGG
GAACTGTTGCTGTAACATATGCAACGAATTCTCCTGACTGTGCTCGATAA
TCTCAATGCTGCCGGTGGTGTTGCCCGAGGTGTTCAATACCGCCACGCCA
CTCGTGTTGGCCACCACGTCGTATTTGCCGCGCTTGAAGCGGCCGTAGAG
CGAGCTGTAGGGCAGGTTATAGTGAATGGCCGCCTGGTTGATGGACATTT
GGCCAACGCGCACTGAGTTCAGGGCCTCGTTCATGGCATCCTCGGACCAG
GGTGTTGGATTCGAACGCGACAGCTCAATGCCCTCCCGTTTGCAGCGTCC
GTAAAGTGTTCCTGTGGGTATGCCAAACTCAGCGCTGGCTTTCTGCACCG
AAGTATTACCCGCCCGTATCGCCTCCAAGGCGCGCTCCAGATCCTCGGGC
GTCCACGTGGTCGGGGCGGCATTGAAGGGCGCCGCAAGGCGGATGCCTTC
GCGCCGTGCAATCTTGTAGAGCGTCG
MXO01382.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2368-PC | 3195 | psq-RC | 2435..3192 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PA | 3141 | psq-RA | 2381..3138 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PI | 1920 | psq-RI | 1160..1917 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PJ | 1920 | psq-RJ | 1160..1917 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PK | 1920 | psq-RK | 1160..1917 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PH | 1938 | psq-RH | 1178..1935 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PG | 1938 | psq-RG | 1178..1935 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PD | 1938 | psq-RD | 1178..1935 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PF | 1938 | psq-RF | 1178..1935 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PB | 3195 | psq-RB | 2435..3192 | 776..19 | 3765 | 99.8 | Minus |
| CG2368-PE | 1938 | psq-RE | 1178..1935 | 776..19 | 3765 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| psq-RK | 4640 | CG2368-RK | 2473..3230 | 776..19 | 3775 | 99.9 | Minus |
| psq-RB | 5367 | CG2368-RB | 3200..3957 | 776..19 | 3775 | 99.9 | Minus |
| psq-RF | 4780 | CG2368-RF | 2613..3370 | 776..19 | 3775 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10614532..10614838 | 325..19 | 1535 | 100 | Minus |
| 2R | 25286936 | 2R | 10613942..10614126 | 509..325 | 910 | 99.5 | Minus |
| 2R | 25286936 | 2R | 10613211..10613376 | 776..611 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 10613766..10613870 | 613..509 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:34 has no hits.
MXO01382.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:05 Download gff for
MXO01382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2368-PE | 1178..1938 | 16..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:41 Download gff for
MXO01382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RF | 2613..3370 | 19..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:33 Download gff for
MXO01382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RF | 2613..3370 | 19..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:33 Download gff for
MXO01382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10613211..10613375 | 612..776 | 100 | -> | Minus |
| 2R | 10613768..10613870 | 509..611 | 100 | -> | Minus |
| 2R | 10613943..10614126 | 325..508 | 99 | -> | Minus |
| 2R | 10614533..10614838 | 19..324 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:41 Download gff for
MXO01382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6500716..6500880 | 612..776 | 100 | -> | Minus |
| arm_2R | 6501273..6501375 | 509..611 | 100 | -> | Minus |
| arm_2R | 6501448..6501631 | 325..508 | 99 | -> | Minus |
| arm_2R | 6502038..6502343 | 19..324 | 100 | | Minus |
MXO01382.5prime Sequence
783 bp (773 high quality bases) assembled on 2007-03-15
> MXO01382.5prime
CAGTCGACATGGCAGCGGTTCGAGGACATCAGTATTTCAGTCTGCGCTGG
AATAACTACCAGAACACGATGACGTCCGTGTTTCAGCAGCTGCGCGAGGA
TCTCTCCTTTGTGGACGTCACTCTGTCCTGCGAGCATGGATCCCTCAAGG
CGCACAAGGTCGTCCTGTCCGCCTGTTCGACGTATTTCCAAAAACTACTG
CTCGAGAATCCGTGCAAACATCCCACAATTATCCTTCCCGCCGACATTAT
CTTCACCGACCTGAAAACGATCATCGATTTTGTTTATCGTGGTGAAATCG
ACGTCACCGAATCGGAATTACAGGGCCTCTTGCGCACCGCCGAGCAGCTA
AAGATCAAGGGACTCTGCGAAACCGCCGAGAACTCTTATGCCCCGCCCGA
CGCGGCCACTGCAACGATCACAGATTCAGAGAACATACAGCAGGCGGTCG
TTGGCAATATAGTGAACGCCGCCATAGTTCCCGGAGCTCCGTCGCCCTCC
TTGGAACAGCAGCAGCAACACCACCAACAGCAGCAACAGCAGCAGGCGCA
GGAGCAGCACCAGCAACAGCAGGTGCATGCCCAGCAGCAACAGCAGCAGC
AGCAGCAAATAAACGCTGCCCTGCTTACGCAACACGGAGTGTCCAGCGGA
AGTGTATCTCTTTCCGGGCAATTGCTGAGCTCCTCGGCTAGCGGCAGCAG
CGGAAGTTTAGCCGGCGGACAGCAGGCATCACAGACGCCATCCGGTTTGC
AGCCGACGCCGCGCAAGTCTCGACTAAAGCGCT
MXO01382.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2368-PC | 3195 | psq-RC | 390..775 | 398..783 | 1905 | 99.7 | Plus |
| CG2368-PA | 3141 | psq-RA | 390..775 | 398..783 | 1905 | 99.7 | Plus |
| CG2368-PL | 1608 | psq-RL | 390..775 | 398..783 | 1905 | 99.7 | Plus |
| CG2368-PB | 3195 | psq-RB | 390..775 | 398..783 | 1905 | 99.7 | Plus |
| CG2368-PC | 3195 | psq-RC | 1..375 | 9..383 | 1875 | 100 | Plus |
| CG2368-PA | 3141 | psq-RA | 1..375 | 9..383 | 1875 | 100 | Plus |
| CG2368-PL | 1608 | psq-RL | 1..375 | 9..383 | 1875 | 100 | Plus |
| CG2368-PB | 3195 | psq-RB | 1..375 | 9..383 | 1875 | 100 | Plus |
| CG8367-PB | 2319 | cg-RB | 2033..2073 | 505..545 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| psq-RN | 6336 | CG2368-RN | 762..1540 | 5..783 | 3760 | 98.8 | Plus |
| psq-RM | 6336 | CG2368-RM | 762..1540 | 5..783 | 3760 | 98.8 | Plus |
| psq-RB | 5367 | CG2368-RB | 762..1540 | 5..783 | 3760 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10610544..10611009 | 318..783 | 2210 | 98.3 | Plus |
| 2R | 25286936 | 2R | 10562024..10562191 | 157..324 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 10561801..10561956 | 5..160 | 765 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:03:10 has no hits.
MXO01382.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:06 Download gff for
MXO01382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2368-PA | 1..775 | 9..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:57 Download gff for
MXO01382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RC | 474..1256 | 1..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:23 Download gff for
MXO01382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RB | 758..1540 | 1..783 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:23 Download gff for
MXO01382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10561797..10561954 | 1..158 | 98 | -> | Plus |
| 2R | 10562026..10562190 | 159..323 | 100 | -> | Plus |
| 2R | 10610550..10611009 | 324..783 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:57 Download gff for
MXO01382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6449302..6449459 | 1..158 | 98 | -> | Plus |
| arm_2R | 6449531..6449695 | 159..323 | 100 | -> | Plus |
| arm_2R | 6498055..6498514 | 324..783 | 98 | | Plus |
