MXO01383.3prime Sequence
680 bp (604 high quality bases) assembled on 2007-03-15
> MXO01383.3prime
ATGGTCTAGAAAGCTTGCAGCCTTCACGCTGCCAATGCCGTTGCCCAGCG
ACTTCATCAGCTGGTAGCACTCCTTGAGCTTTCGCTTGTCGCCCACCTTC
TCCAGGGTCTTGGCCGCCTCGGCTAACATGCCAGCACGTTCACCCGGGGA
GCTGAGCAGCGCAGGCGGGAGATACTTGCAGGCCACGTACATGGCCGAAG
CCCGTTCCCGCTCTCCGCCCACGAAGTTCTGCTGCCGCCGATCCTTGCTG
CCGCAGAAGATGGACGAGTGGGCGTTGCGTGATCGCAGACTCCTGTCCAA
GAGCTGTTGCGTTGGACACGGTGAGGCTCCAGCCATCAGGCGACAAACTG
CCTCGTACAAATATATGCGCGATTGGGCGTTCGGTATATTCTCCACAATG
TTGCGCAACGAGTTCAAATCGGTCTGGAACTTCTCGAGCACTTCACCTGG
CACTTGGTAGAAGCCATCGTCCTCCATATTCATGTGTTCCAGTTCCCACA
GAGCAGTCCTAGTTTCGAGCAGCCAATCGCAGGTAAGCAACTGGAAAAGC
AGCTTTATACCCTTGGCGTCGGTGATCCGGTTGACAGTCAAGCACTCTTG
GAGCTCCACACTCGACTCATCGCAGAGGATGTTTACCAATTGCTTGAGAC
TTTTTGTCAGTGCGTTGCCATTGTTTTTTA
MXO01383.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8522-PA | 3342 | HLH106-RA | 2704..3339 | 654..19 | 3180 | 100 | Minus |
| CG8522-PB | 3342 | HLH106-RB | 2704..3339 | 654..19 | 3180 | 100 | Minus |
| CG8522-PC | 3342 | HLH106-RC | 2704..3339 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH106-RD | 3920 | CG8522-RD | 3016..3677 | 680..19 | 3265 | 99.7 | Minus |
| HLH106-RC | 3818 | CG8522-RC | 2914..3575 | 680..19 | 3265 | 99.7 | Minus |
| HLH106-RB | 3951 | CG8522-RB | 3047..3708 | 680..19 | 3265 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19798369..19798736 | 386..19 | 1825 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19798132..19798300 | 550..382 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 19797780..19797906 | 676..550 | 590 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:47 has no hits.
MXO01383.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:06 Download gff for
MXO01383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8522-PC | 2679..3342 | 18..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:07 Download gff for
MXO01383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RB | 3048..3708 | 19..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:58 Download gff for
MXO01383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RB | 3048..3708 | 19..679 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:58 Download gff for
MXO01383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19797777..19797906 | 550..679 | 96 | -> | Minus |
| 3L | 19798133..19798300 | 382..549 | 100 | -> | Minus |
| 3L | 19798374..19798736 | 19..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:07 Download gff for
MXO01383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19790877..19791006 | 550..679 | 96 | -> | Minus |
| arm_3L | 19791233..19791400 | 382..549 | 100 | -> | Minus |
| arm_3L | 19791474..19791836 | 19..381 | 100 | | Minus |
MXO01383.5prime Sequence
843 bp (728 high quality bases) assembled on 2007-03-15
> MXO01383.5prime
CAGTCGACATGGACACGACACTGATGAACTTAATAGACGCTCCGCTGGAC
GAGTCCATGGATTTGTTCAAAGCGGAGGATGTCTTCGAACCGTTCGACGC
CGACCTGCACTCGGACATGCTGGACATCATCCTCAACGACATGGACCTGG
CGCCGACGCAGATGTACAACATGCTGCTGGACGAGCCTCGAACGCATACC
CAGCAGACGCAGTCCGTGGATCAGCAGCCGCAATCCGTCGAGCAACAGCC
GCACGTGAAAAGCGAGCACTCTTCGCCAGTGCACATCAAGGAGGAACTGC
ATCAGCAGCAACAACAGTCGCCGCTTCTCGTCTACAAACCAGATCCCCTC
ATAGCCACAAGCTACAATTGTCCCCAGCAACAGCCGACTGGCCTTCCCCC
CGCCGCCCAACCAACAGCCACCATACATCACATGGACGCCCAGCGGATGC
CGCCGAACACGGCGGTGTATCCCCCATCTCTGGGCAGTAGCTTTGTCTAC
CAGTCCATGTCCCCGCCCACGTCGCCGGTGGAGTCTGCGAACCAGAATGT
CAATGTCATGCAGCCCGTTGCTGCAACTCCTGCTCCCGCTTCTGCTCCTT
TGCCCCAGCAGTCGTATCCGCAACCCTTCATTACGTACAACTCTAAGGCC
GGAATGACTTCCGATGAAGCCATGTACTTCCTCTTGCAGCCCACGGTAGC
CAGTCCAACCCCATCTCCACCTGTGGCTCCACCACCGACAAGCACAGGTA
GTCGGGCCAGCAAGGTGCGAGTGGCACCACTGGCTCCGTCACCTGCCGCT
ATGGAAGTCCAGGGCAAGGTACCTATCAACCGGGTTCAACCCA
MXO01383.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8522-PA | 3342 | HLH106-RA | 394..835 | 402..843 | 2210 | 100 | Plus |
| CG8522-PB | 3342 | HLH106-RB | 394..835 | 402..843 | 2210 | 100 | Plus |
| CG8522-PC | 3342 | HLH106-RC | 394..835 | 402..843 | 2210 | 100 | Plus |
| CG8522-PA | 3342 | HLH106-RA | 1..387 | 9..395 | 1910 | 99.7 | Plus |
| CG8522-PB | 3342 | HLH106-RB | 1..387 | 9..395 | 1910 | 99.7 | Plus |
| CG8522-PC | 3342 | HLH106-RC | 1..387 | 9..395 | 1910 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH106-RD | 3920 | CG8522-RD | 339..1173 | 9..843 | 4070 | 99.2 | Plus |
| HLH106-RC | 3818 | CG8522-RC | 237..1071 | 9..843 | 4070 | 99.2 | Plus |
| HLH106-RB | 3951 | CG8522-RB | 370..1204 | 9..843 | 4070 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19794910..19795744 | 9..843 | 4070 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-28 19:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6866 | 159..318 | 127 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 201..324 | 126 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1152 | 220..316 | 116 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6898 | 166..317 | 111 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2723..2833 | 219..328 | 110 | 61.4 | Plus |
MXO01383.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:07 Download gff for
MXO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8522-PC | 1..834 | 9..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:39 Download gff for
MXO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RB | 362..1203 | 1..842 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:42 Download gff for
MXO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RB | 362..1203 | 1..842 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:42 Download gff for
MXO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19794902..19795743 | 1..842 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:39 Download gff for
MXO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19788002..19788843 | 1..842 | 98 | | Plus |
