Clone MXO01384 Report

Search the DGRC for MXO01384

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:84
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptbs-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01384.5prime Sequence

709 bp (687 high quality bases) assembled on 2007-03-15

> MXO01384.5prime
CAGTCGACATGGATCCGACGCGAGGCGCCTCGCGGTACAATCTCAACTAC
TCGATGAGTAGCATAGGGCTGAGCCTGGCGGATCCGGCGGACATGTACGG
CAACCCGGCCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCTGCTCCAGA
ACATGGGCGGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGGCAGGAGCA
CCCCCTGCCCCGCAGTGCCAAACGCTCCACAGCCCACAGCACGCCTCCCA
GCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCAGCAGCAAC
AACAGCAGCAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGCGCTCCGGC
AGCGACTGCTACGAGGATCACCACCGCTCGTCCGGTGTACTCCCCCCCCA
AGGACTGGACAACGTGGCCAGCGGAGCCGTCGACGACAGCGTAGACAACT
ACAACCCGCTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCAAAAAGACA
AAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAGCTGCGTCG
CTACACGACCTTCTCCAAGCGCAAGACGGGCATAATGAAGAAGGCCTACG
AGCTGTCCACGCTGACCGGGACGCAGGTGATGCTGCTGGTGGCCAGCGAG
ACGGGCCACGTGTACACATTTGCCACGCGCAAGCTGCAGCCGATGATCCC
CTCGGAGGC

MXO01384.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3411-PA 1350 bs-RA 1..701 9..709 3330 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
bs-RC 3062 CG3411-RC 1230..1930 9..709 3400 99 Plus
bs-RB 3792 CG3411-RB 1230..1930 9..709 3400 99 Plus
bs-RA 2221 CG3411-RA 389..1089 9..709 3400 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24344090..24344675 9..594 2840 99 Plus
2R 25286936 2R 24348210..24348327 592..709 575 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 22:08:41 has no hits.

MXO01384.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:07 Download gff for MXO01384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3411-PA 1..701 9..709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:47 Download gff for MXO01384.5prime
Subject Subject Range Query Range Percent Splice Strand
bs-RA 382..1089 1..709 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:57 Download gff for MXO01384.5prime
Subject Subject Range Query Range Percent Splice Strand
bs-RA 382..1089 1..709 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:57 Download gff for MXO01384.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24344083..24344674 1..593 98 -> Plus
2R 24348212..24348327 594..709 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:47 Download gff for MXO01384.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20231606..20232197 1..593 98 -> Plus
arm_2R 20235735..20235850 594..709 99   Plus

MXO01384.3prime Sequence

812 bp (754 high quality bases) assembled on 2007-03-15

> MXO01384.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGAACTCCTGTTTGATGGTCAAGGGCT
TATCGGCACTGGCATCGTTCTTGACGGGCGTTCCCGATCCTGAGGCTCCT
GATCCAGAGGCTGTTAGCTTATTGCTCTTTATCAGATTGGCTGCTGTGGA
GCTGAGCGGTATGGTCACATACTGGTTGCCATCCTCTTCGGCGTGCACCT
GCAAGTGGCCTGACTGGATGAGCTGCCTCAGCATCTTCTGCGGTATGTTG
GCAATCGAGGCAGCGGAGTAGACGTACTTGCTGTCCGCCGAGCCTCCTCC
TCCGGCGGCGGTGGACGTTGAGGGTCCGCTGTTGGTGTCAGTCTGATAGT
TCAATGCTGGCATGGTTTTGTGGCCAGAGGATGCGGCGGCCGCCGAGCAT
GAGGCTGCTGGAGGCGCTGATACCTCTGTTTTGCTGGCCGGCAACTTGGT
TGCCACCTCAGCAGCCTCCGCCGGCATCTCCACGTCCGACGAATCATCCG
ACTCGTTGCCCGACGAGGTAGGCGATCGGTCATCTTTCGAGTCCTCGTCG
GCGATGTTGTAGCTGAGCTCCGTCTCCTCGAACCCGGTGGCCGACATCCG
TTGGTCGCCGCCGCCCACACTGGGCGGATCCGGCGAGTTGAGGCAGGTCT
GGATGAGCTGCTTTCCCGCCTCCGAGGTGATCATCGGCTGCAGCTTGCGC
GTGGCAAATGTGTACACGTGGCCCGTCTCGCTGGCCACCAGCAGCATCAC
CTGCGTCCCGGTCAGCGTGGACAGCTCGTAGGCCTTCTTCATTATGCCCG
TCTTGCGCTTGG

MXO01384.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3411-PA 1350 bs-RA 557..1346 812..23 3900 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
bs-RC 3062 CG3411-RC 1786..2575 812..23 3920 99.7 Minus
bs-RA 2221 CG3411-RA 945..1734 812..23 3920 99.7 Minus
bs-RB 3792 CG3411-RB 1786..2064 812..534 1395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24375415..24375766 534..183 1730 99.4 Minus
2R 25286936 2R 24348210..24348461 785..534 1260 100 Minus
2R 25286936 2R 24375826..24375986 183..23 805 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:24:26 has no hits.

MXO01384.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:07 Download gff for MXO01384.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3411-PA 557..1350 19..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:26 Download gff for MXO01384.3prime
Subject Subject Range Query Range Percent Splice Strand
bs-RA 945..1738 19..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:46 Download gff for MXO01384.3prime
Subject Subject Range Query Range Percent Splice Strand
bs-RA 945..1738 19..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:46 Download gff for MXO01384.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24344646..24344674 784..812 100 -> Minus
2R 24348212..24348460 535..783 100 -> Minus
2R 24375415..24375766 183..534 99 -> Minus
2R 24375827..24375990 19..182 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:26 Download gff for MXO01384.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20232169..20232197 784..812 100 -> Minus
arm_2R 20235735..20235983 535..783 100 -> Minus
arm_2R 20262938..20263289 183..534 99 -> Minus
arm_2R 20263350..20263513 19..182 98   Minus