MXO01384.5prime Sequence
709 bp (687 high quality bases) assembled on 2007-03-15
> MXO01384.5prime
CAGTCGACATGGATCCGACGCGAGGCGCCTCGCGGTACAATCTCAACTAC
TCGATGAGTAGCATAGGGCTGAGCCTGGCGGATCCGGCGGACATGTACGG
CAACCCGGCCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCTGCTCCAGA
ACATGGGCGGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGGCAGGAGCA
CCCCCTGCCCCGCAGTGCCAAACGCTCCACAGCCCACAGCACGCCTCCCA
GCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCAGCAGCAAC
AACAGCAGCAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGCGCTCCGGC
AGCGACTGCTACGAGGATCACCACCGCTCGTCCGGTGTACTCCCCCCCCA
AGGACTGGACAACGTGGCCAGCGGAGCCGTCGACGACAGCGTAGACAACT
ACAACCCGCTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCAAAAAGACA
AAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAGCTGCGTCG
CTACACGACCTTCTCCAAGCGCAAGACGGGCATAATGAAGAAGGCCTACG
AGCTGTCCACGCTGACCGGGACGCAGGTGATGCTGCTGGTGGCCAGCGAG
ACGGGCCACGTGTACACATTTGCCACGCGCAAGCTGCAGCCGATGATCCC
CTCGGAGGC
MXO01384.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3411-PA | 1350 | bs-RA | 1..701 | 9..709 | 3330 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bs-RC | 3062 | CG3411-RC | 1230..1930 | 9..709 | 3400 | 99 | Plus |
bs-RB | 3792 | CG3411-RB | 1230..1930 | 9..709 | 3400 | 99 | Plus |
bs-RA | 2221 | CG3411-RA | 389..1089 | 9..709 | 3400 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24344090..24344675 | 9..594 | 2840 | 99 | Plus |
2R | 25286936 | 2R | 24348210..24348327 | 592..709 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:08:41 has no hits.
MXO01384.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:07 Download gff for
MXO01384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3411-PA | 1..701 | 9..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:47 Download gff for
MXO01384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 382..1089 | 1..709 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:57 Download gff for
MXO01384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 382..1089 | 1..709 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:57 Download gff for
MXO01384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24344083..24344674 | 1..593 | 98 | -> | Plus |
2R | 24348212..24348327 | 594..709 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:47 Download gff for
MXO01384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20231606..20232197 | 1..593 | 98 | -> | Plus |
arm_2R | 20235735..20235850 | 594..709 | 99 | | Plus |
MXO01384.3prime Sequence
812 bp (754 high quality bases) assembled on 2007-03-15
> MXO01384.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGAACTCCTGTTTGATGGTCAAGGGCT
TATCGGCACTGGCATCGTTCTTGACGGGCGTTCCCGATCCTGAGGCTCCT
GATCCAGAGGCTGTTAGCTTATTGCTCTTTATCAGATTGGCTGCTGTGGA
GCTGAGCGGTATGGTCACATACTGGTTGCCATCCTCTTCGGCGTGCACCT
GCAAGTGGCCTGACTGGATGAGCTGCCTCAGCATCTTCTGCGGTATGTTG
GCAATCGAGGCAGCGGAGTAGACGTACTTGCTGTCCGCCGAGCCTCCTCC
TCCGGCGGCGGTGGACGTTGAGGGTCCGCTGTTGGTGTCAGTCTGATAGT
TCAATGCTGGCATGGTTTTGTGGCCAGAGGATGCGGCGGCCGCCGAGCAT
GAGGCTGCTGGAGGCGCTGATACCTCTGTTTTGCTGGCCGGCAACTTGGT
TGCCACCTCAGCAGCCTCCGCCGGCATCTCCACGTCCGACGAATCATCCG
ACTCGTTGCCCGACGAGGTAGGCGATCGGTCATCTTTCGAGTCCTCGTCG
GCGATGTTGTAGCTGAGCTCCGTCTCCTCGAACCCGGTGGCCGACATCCG
TTGGTCGCCGCCGCCCACACTGGGCGGATCCGGCGAGTTGAGGCAGGTCT
GGATGAGCTGCTTTCCCGCCTCCGAGGTGATCATCGGCTGCAGCTTGCGC
GTGGCAAATGTGTACACGTGGCCCGTCTCGCTGGCCACCAGCAGCATCAC
CTGCGTCCCGGTCAGCGTGGACAGCTCGTAGGCCTTCTTCATTATGCCCG
TCTTGCGCTTGG
MXO01384.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3411-PA | 1350 | bs-RA | 557..1346 | 812..23 | 3900 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bs-RC | 3062 | CG3411-RC | 1786..2575 | 812..23 | 3920 | 99.7 | Minus |
bs-RA | 2221 | CG3411-RA | 945..1734 | 812..23 | 3920 | 99.7 | Minus |
bs-RB | 3792 | CG3411-RB | 1786..2064 | 812..534 | 1395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24375415..24375766 | 534..183 | 1730 | 99.4 | Minus |
2R | 25286936 | 2R | 24348210..24348461 | 785..534 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 24375826..24375986 | 183..23 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:24:26 has no hits.
MXO01384.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:07 Download gff for
MXO01384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3411-PA | 557..1350 | 19..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:26 Download gff for
MXO01384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 945..1738 | 19..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:46 Download gff for
MXO01384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 945..1738 | 19..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:46 Download gff for
MXO01384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24344646..24344674 | 784..812 | 100 | -> | Minus |
2R | 24348212..24348460 | 535..783 | 100 | -> | Minus |
2R | 24375415..24375766 | 183..534 | 99 | -> | Minus |
2R | 24375827..24375990 | 19..182 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:26 Download gff for
MXO01384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20232169..20232197 | 784..812 | 100 | -> | Minus |
arm_2R | 20235735..20235983 | 535..783 | 100 | -> | Minus |
arm_2R | 20262938..20263289 | 183..534 | 99 | -> | Minus |
arm_2R | 20263350..20263513 | 19..182 | 98 | | Minus |