Clone Sequence Records
MXO01386.3prime Sequence
561 bp (561 high quality bases) assembled on 2007-03-15
> MXO01386.3prime
ATGGTCTAGAAAGCTTGCTTTCCAAGGGCGCCACATGGTTTCTTCGACTG
GCTTGGGGCTGGCGGCGGATTGAGAGTCCTCGTTATCGCTGTGGTATCCC
GAGGAGGCGGGGCTGAGTGGGCGTGGGGTGGAGGTTGTAACAGAAGTCTG
GACCTGATCGGCCTGCAGCATGCGCTGGAACTCGACGCCCAGATGGGTCA
TCACTGTCTTGCCCACATCCACACTCATGGCTGGAGTGCAGGCCATCACA
CGGGAGATCTCGCTGACGGCGTTCATGTAGCCATTCTTGAAGCTATCCAT
GGGAAGTGGGGAGACCGGCGCCTGCTGCTTGACGACCTGTTTGCGCATGA
AGACGAGTGCCGCCTCCAGCATCTCGGCCTTGTCCTTCCCCACGATGGCA
TCATCGCCCTGGAACTCGGACACCAAGGTCTTCAAGGTGTCCAAACACTT
GTTCATGCGGGCCCGACGCTGGCGCTCCAAAAGGGGCTTCTTCACCTTCA
AATAGTGCTGGGTCTTGGAGACGAATGTGGTGCTGTTGTTGCTCTGTGGT
GCCATGTCGAC
MXO01386.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6096-PA | 537 | HLHm5-RA | 171..534 | 385..22 | 1820 | 100 | Minus |
| CG6096-PA | 537 | HLHm5-RA | 1..162 | 555..394 | 785 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..617 | 555..22 | 2595 | 99.1 | Minus |
| E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 518..188 | 395 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26029119..26029652 | 22..555 | 2595 | 99.1 | Plus |
| 3R | 32079331 | 3R | 26040337..26040673 | 518..188 | 325 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:06:51 has no hits.
MXO01386.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:08 Download gff for
MXO01386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6096-PA | 1..537 | 19..555 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:06 Download gff for
MXO01386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 77..624 | 16..561 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:58 Download gff for
MXO01386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 77..624 | 16..561 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:58 Download gff for
MXO01386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26029112..26029656 | 16..561 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:06 Download gff for
MXO01386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21854834..21855378 | 16..561 | 97 | | Plus |
MXO01386.5prime Sequence
561 bp (561 high quality bases) assembled on 2007-03-15
> MXO01386.5prime
CAGTCGACATGGCACCACAGAGCAACAACAGCACCACATTCGTCTCCAAG
ACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTTGGAGCGCCAGCGTCG
GGCCCGCATGAACAAGTGTTTGGACACCTTGAAGACCTTGGTGGCCGAGT
TCCAGGGCGATGATGCCATCCTGCGAATGGACAAGGCCGAGATGCTGGAG
GCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAAGCAGCAGGCGCCGGT
CTCCCCACTTCCCATGGATAGCTTCAAGAATGGCTACATGAACGCCGTCA
GCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCCATGAGTGTGGATGTG
GGCAAGACAGTGATGACCCATCTGGGCGTCGAGTTCCAGCGCATGCTGCA
GGCCGATCAGGTCCAGACTTCTGTTACAACCTCCACCCCACGCCCACTCA
GCCCCGCCTCCTCGGGATACCACAGCGATAACGAGGACTCTCAATCCGCC
GCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCGCCCTTGGAAAGCAAG
CTTTCTAGACC
MXO01386.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6096-PA | 537 | HLHm5-RA | 1..534 | 9..542 | 2670 | 100 | Plus |
| CG8365-PA | 540 | E(spl)-RA | 127..164 | 159..196 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..617 | 9..542 | 2670 | 100 | Plus |
| E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 46..376 | 455 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26029119..26029652 | 542..9 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 26040337..26040673 | 46..376 | 385 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:54 has no hits.
MXO01386.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:09 Download gff for
MXO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6096-PA | 1..537 | 9..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:55 Download gff for
MXO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 1..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:31 Download gff for
MXO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 1..548 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:31 Download gff for
MXO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26029112..26029661 | 1..548 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:55 Download gff for
MXO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21854834..21855383 | 1..548 | 98 | | Minus |
