Clone Sequence Records
MXO01387.3prime Sequence
846 bp (684 high quality bases) assembled on 2007-03-15
> MXO01387.3prime
ATGGTCTAGAAAGCTTGCTTTGGATACCGAACTAATTGCATTATGCGGAG
AGCCCATTTGGGTGAGCACCTTGTCCAGCCACTGGAGCGGCCCGTGCAGA
TGGATTTCAATCCAACAGGGCGTCGAGGTCACATCCTGGCGATGATACTC
CGCACCCCAGCCCTTCACGAACGACATCCGGATCGTGCACATCTTTGTCA
GCTCGTAGACGGCCTCGAATCCATTGTTCACCGACTGCGACAGCAGCTGA
GCAAATTCCTGATTGTTGAAGATCTTCAGCGAGCAGCCCGGCGGTATTTT
GCACACGGTGCTCGGATGGAATCCGTGGTGGTAGTTGCAGTTGCGCGACT
GCACGAAAATGGCGGAGTCGGATAGGCATTCTTTTCCCCCCCCTCGCCGG
TCACATAGTATAAATGAACACACTTGCCTATATGACGGCGTGTGTTCTCG
ATGGTGCTATTCCTGTTCACGTTGCTCAGCTGGCCGAGACAGCAGCGGTC
CGAGTTGTTGGAAGGATTCGTGAAACCGTCAACGATCACGGAGTTGTTGT
TGCAGTGGAACACCTCGCCCACGCGGCAATTTAGCTCGTAGTAGGCTATC
GACGCCCAGAAGGCGGGCTCCGAATAGCTAACCTGGGCAACATCGCCCAT
CTGAGCATCCAGCAGCTGGCCACCGTCGTTCGGATTGTTGGAGTTGCCAT
CCTCCGAGGGACTGTAGGCGGGTGGCGGTGTTCCCGCCAAGCTGTCGTAC
GGCGAATTGGGATTGGAGTTGACGGAACTCGGACTGCCCACCGATGTGTT
GCTGGTGCTCAAGCTGTGCGAGTTGAATCCACTGTTCGAGTAGCTC
MXO01387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12399-PA | 1368 | Mad-RA | 543..997 | 846..392 | 2250 | 99.7 | Minus |
CG12399-PA | 1368 | Mad-RA | 1006..1365 | 381..22 | 1800 | 100 | Minus |
CG2262-PA | 1461 | Smox-RA | 1348..1406 | 132..74 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mad-RB | 3262 | CG12399-RB | 1074..1901 | 846..17 | 3975 | 98.7 | Minus |
Mad-RA | 2691 | CG12399-RA | 899..1726 | 846..17 | 3975 | 98.7 | Minus |
Smox-RB | 4521 | CG2262-RB | 2041..2306 | 318..53 | 550 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3148046..3148465 | 427..846 | 2100 | 100 | Plus |
2L | 23513712 | 2L | 3147417..3147827 | 17..429 | 1865 | 97.3 | Plus |
X | 23542271 | X | 8139256..8139521 | 53..318 | 550 | 80.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:17 has no hits.
MXO01387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:09 Download gff for
MXO01387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12399-PA | 543..1368 | 19..846 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:47 Download gff for
MXO01387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 899..1726 | 17..846 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:57 Download gff for
MXO01387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 899..1726 | 17..846 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:57 Download gff for
MXO01387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3147418..3147825 | 18..427 | 97 | <- | Plus |
2L | 3148047..3148465 | 428..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:47 Download gff for
MXO01387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3147418..3147825 | 18..427 | 97 | <- | Plus |
arm_2L | 3148047..3148465 | 428..846 | 100 | | Plus |
MXO01387.5prime Sequence
825 bp (744 high quality bases) assembled on 2007-03-15
> MXO01387.5prime
CAGTCGACATGGACACCGACGATGTGCGAATCGAACACAAGCAGCGCGAT
GTCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTGAAGAAGC
TGCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGAGAAGGCC
GTCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCATCGAGGA
GCTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCAAAGTGTGTCACCA
TTCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAAGGGTCTG
CCGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGCAGTCGCA
CCACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCACCCCCAACC
AGAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGAGAGTCCG
GTGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGCCCGGTCA
CTCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCGCACAATG
TGAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCACCAGCAAC
ACATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATTCGCCGTA
CGACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCGGAGGATG
GCAACTCCAACAATCCGAACGACGGTGGCCAGCTGCTGGATGCTCAGATG
GGCGATGTTGCCCAGGTTAGCTATTCGGAGCCCGCCTTCTGGGCGTCGAT
AGCCTACTACGAGCTAAATTGCCGC
MXO01387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12399-PA | 1368 | Mad-RA | 19..816 | 28..825 | 3890 | 99.4 | Plus |
CG2262-PA | 1461 | Smox-RA | 232..284 | 289..341 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mad-RB | 3262 | CG12399-RB | 532..1347 | 9..825 | 4000 | 99.4 | Plus |
Mad-RA | 2691 | CG12399-RA | 357..1172 | 9..825 | 4000 | 99.4 | Plus |
Smox-RB | 4521 | CG2262-RB | 1111..1193 | 289..371 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3148192..3148740 | 825..277 | 2700 | 99.5 | Minus |
2L | 23513712 | 2L | 3148802..3149073 | 281..9 | 1300 | 99.3 | Minus |
X | 23542271 | X | 8140369..8140451 | 371..289 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:29 has no hits.
MXO01387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:10 Download gff for
MXO01387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12399-PA | 1..816 | 9..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:51 Download gff for
MXO01387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 350..1172 | 1..825 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:51 Download gff for
MXO01387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 350..1172 | 1..825 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:51 Download gff for
MXO01387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3148192..3148737 | 280..825 | 99 | <- | Minus |
2L | 3148804..3149077 | 1..279 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:51 Download gff for
MXO01387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3148192..3148737 | 280..825 | 99 | <- | Minus |
arm_2L | 3148804..3149077 | 1..279 | 97 | | Minus |