Clone MXO01387 Report

Search the DGRC for MXO01387

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:87
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptMad-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01387.3prime Sequence

846 bp (684 high quality bases) assembled on 2007-03-15

> MXO01387.3prime
ATGGTCTAGAAAGCTTGCTTTGGATACCGAACTAATTGCATTATGCGGAG
AGCCCATTTGGGTGAGCACCTTGTCCAGCCACTGGAGCGGCCCGTGCAGA
TGGATTTCAATCCAACAGGGCGTCGAGGTCACATCCTGGCGATGATACTC
CGCACCCCAGCCCTTCACGAACGACATCCGGATCGTGCACATCTTTGTCA
GCTCGTAGACGGCCTCGAATCCATTGTTCACCGACTGCGACAGCAGCTGA
GCAAATTCCTGATTGTTGAAGATCTTCAGCGAGCAGCCCGGCGGTATTTT
GCACACGGTGCTCGGATGGAATCCGTGGTGGTAGTTGCAGTTGCGCGACT
GCACGAAAATGGCGGAGTCGGATAGGCATTCTTTTCCCCCCCCTCGCCGG
TCACATAGTATAAATGAACACACTTGCCTATATGACGGCGTGTGTTCTCG
ATGGTGCTATTCCTGTTCACGTTGCTCAGCTGGCCGAGACAGCAGCGGTC
CGAGTTGTTGGAAGGATTCGTGAAACCGTCAACGATCACGGAGTTGTTGT
TGCAGTGGAACACCTCGCCCACGCGGCAATTTAGCTCGTAGTAGGCTATC
GACGCCCAGAAGGCGGGCTCCGAATAGCTAACCTGGGCAACATCGCCCAT
CTGAGCATCCAGCAGCTGGCCACCGTCGTTCGGATTGTTGGAGTTGCCAT
CCTCCGAGGGACTGTAGGCGGGTGGCGGTGTTCCCGCCAAGCTGTCGTAC
GGCGAATTGGGATTGGAGTTGACGGAACTCGGACTGCCCACCGATGTGTT
GCTGGTGCTCAAGCTGTGCGAGTTGAATCCACTGTTCGAGTAGCTC

MXO01387.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12399-PA 1368 Mad-RA 543..997 846..392 2250 99.7 Minus
CG12399-PA 1368 Mad-RA 1006..1365 381..22 1800 100 Minus
CG2262-PA 1461 Smox-RA 1348..1406 132..74 170 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 3262 CG12399-RB 1074..1901 846..17 3975 98.7 Minus
Mad-RA 2691 CG12399-RA 899..1726 846..17 3975 98.7 Minus
Smox-RB 4521 CG2262-RB 2041..2306 318..53 550 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3148046..3148465 427..846 2100 100 Plus
2L 23513712 2L 3147417..3147827 17..429 1865 97.3 Plus
X 23542271 X 8139256..8139521 53..318 550 80.5 Plus
Blast to na_te.dros performed on 2014-11-28 19:30:17 has no hits.

MXO01387.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:09 Download gff for MXO01387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12399-PA 543..1368 19..846 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:47 Download gff for MXO01387.3prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 899..1726 17..846 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:57 Download gff for MXO01387.3prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 899..1726 17..846 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:57 Download gff for MXO01387.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3147418..3147825 18..427 97 <- Plus
2L 3148047..3148465 428..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:47 Download gff for MXO01387.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3147418..3147825 18..427 97 <- Plus
arm_2L 3148047..3148465 428..846 100   Plus

MXO01387.5prime Sequence

825 bp (744 high quality bases) assembled on 2007-03-15

> MXO01387.5prime
CAGTCGACATGGACACCGACGATGTGCGAATCGAACACAAGCAGCGCGAT
GTCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTGAAGAAGC
TGCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGAGAAGGCC
GTCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCATCGAGGA
GCTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCAAAGTGTGTCACCA
TTCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAAGGGTCTG
CCGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGCAGTCGCA
CCACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCACCCCCAACC
AGAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGAGAGTCCG
GTGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGCCCGGTCA
CTCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCGCACAATG
TGAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCACCAGCAAC
ACATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATTCGCCGTA
CGACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCGGAGGATG
GCAACTCCAACAATCCGAACGACGGTGGCCAGCTGCTGGATGCTCAGATG
GGCGATGTTGCCCAGGTTAGCTATTCGGAGCCCGCCTTCTGGGCGTCGAT
AGCCTACTACGAGCTAAATTGCCGC

MXO01387.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12399-PA 1368 Mad-RA 19..816 28..825 3890 99.4 Plus
CG2262-PA 1461 Smox-RA 232..284 289..341 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 3262 CG12399-RB 532..1347 9..825 4000 99.4 Plus
Mad-RA 2691 CG12399-RA 357..1172 9..825 4000 99.4 Plus
Smox-RB 4521 CG2262-RB 1111..1193 289..371 205 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3148192..3148740 825..277 2700 99.5 Minus
2L 23513712 2L 3148802..3149073 281..9 1300 99.3 Minus
X 23542271 X 8140369..8140451 371..289 205 83.1 Minus
Blast to na_te.dros performed on 2014-11-28 20:12:29 has no hits.

MXO01387.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:10 Download gff for MXO01387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12399-PA 1..816 9..825 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:51 Download gff for MXO01387.5prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 350..1172 1..825 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:51 Download gff for MXO01387.5prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 350..1172 1..825 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:51 Download gff for MXO01387.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3148192..3148737 280..825 99 <- Minus
2L 3148804..3149077 1..279 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:51 Download gff for MXO01387.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3148192..3148737 280..825 99 <- Minus
arm_2L 3148804..3149077 1..279 97   Minus