MXO01388.3prime Sequence
726 bp (621 high quality bases) assembled on 2007-03-15
> MXO01388.3prime
ATGGTCTAGAAAGCTTGCCTTCTCGTCCTCCTCCTGCGACTCGCTGCTCT
GATCTACCGGATCGACCTCATCCGTCTTTTCTTTGCTGCCGCTGTCCTCG
TTGCGAAGCGAGGACTGGACCAATTCGCGGGTGAACTTCTGCACCAAGCG
CAAGGCAGTGGCCGCTGGCATATCGCACAGGGAGTGGCACATGAACTCGC
CAAATCCCCGGAATTTGGCGTACGCCGGTGGCAAGGGGGCTAGAGGTTGT
GTTGGATAGTATCCGGATATCGACAGACTGTCGTCGACTCGGCGTTTCGA
CGGATGATCGTCCAAGTGCTGTGATCCACGCTTATTGCTCCTCATGGGAT
TAACAATTGGACTACTGATGATGTACTCTTGCTGCCCCCCCCGTCGTCGG
TGATAGCTTTCCGCAAAGAGATTGTAGCCCTTGCCATTGGGCATTTCTCC
ATTCGTCGAGCGCTGGCTCTTGTTGGCTTCGTCAGAGTTATTCAGGGGAA
TCCCTAACACTGTGGTCACGGGGAGTGCCTGCTCGCAATCGAAGATCTCG
GAGTCGTCCTCCAGTTCGTCCTTGATGCTGTTCATATGCCCGTTGCTGTC
GCTCCGGCAATCGTCCACCTCGTAAGTCTCCTCATCCTCCTCCTTTACGC
TCATGTTCTTAAAGCTGCGCCTGGGCCGTATGTGAATCCCCAGAAACTGG
AGGCTTTCGAATAAAGGCCATTGTGA
MXO01388.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17383-PA | 1011 | CG17383-RA | 652..1008 | 378..22 | 1785 | 100 | Minus |
CG17383-PB | 1011 | CG17383-RB | 652..1008 | 378..22 | 1785 | 100 | Minus |
CG17383-PD | 1011 | CG17383-RD | 652..1008 | 378..22 | 1785 | 100 | Minus |
CG17383-PC | 1011 | CG17383-RC | 652..1008 | 378..22 | 1785 | 100 | Minus |
CG17383-PA | 1011 | CG17383-RA | 304..637 | 726..393 | 1545 | 98.5 | Minus |
CG17383-PB | 1011 | CG17383-RB | 304..637 | 726..393 | 1545 | 98.5 | Minus |
CG17383-PD | 1011 | CG17383-RD | 304..637 | 726..393 | 1545 | 98.5 | Minus |
CG17383-PC | 1011 | CG17383-RC | 304..637 | 726..393 | 1545 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jigr1-RG | 1607 | CG17383-RG | 697..1401 | 726..22 | 3300 | 97.9 | Minus |
jigr1-RF | 1635 | CG17383-RF | 725..1429 | 726..22 | 3300 | 97.9 | Minus |
jigr1-RE | 1782 | CG17383-RE | 725..1429 | 726..22 | 3300 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25649563..25650044 | 503..22 | 2245 | 97.7 | Minus |
3R | 32079331 | 3R | 25649274..25649498 | 726..502 | 1065 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:20:20 has no hits.
MXO01388.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:10 Download gff for
MXO01388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17383-PD | 305..1011 | 19..725 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:11 Download gff for
MXO01388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RE | 726..1432 | 19..725 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:44 Download gff for
MXO01388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RE | 726..1432 | 19..725 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:44 Download gff for
MXO01388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25649275..25649497 | 503..725 | 98 | -> | Minus |
3R | 25649564..25650047 | 19..502 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:11 Download gff for
MXO01388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21474997..21475219 | 503..725 | 98 | -> | Minus |
arm_3R | 21475286..21475769 | 19..502 | 97 | | Minus |
MXO01388.5prime Sequence
902 bp (685 high quality bases) assembled on 2007-03-15
> MXO01388.5prime
CAGTCGACATGGAGAACCTGTCGCACTTGTATCCACCGCAGTTGCCAAAG
GGGCGTGGTCGGCCTCGAGCGACATACGCCCAAACGGGCGAGTTTGATCT
GGGTCTGATCCGGGAATACCGATCGCACCCAGTGCTGTACGATAGGTCAA
ACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCATATATGGGAACAGATA
GCCCACAAACTGGGCTACGATGCCACCAGTATAAGGGAACGGATGACCAC
GTTAAGGAATCGATATAACATCGAGAAGCGACGCGTCGAGAATGGCCTTT
CCACACAGTCTTCACAATGGCCTCTATTCGAAAGCCTCCAGTTTCTGGGG
GATCACATACGGCCCAGGCGCAGCTTTAAGAACATGTTCCCCCCCCGACG
AGGATGAGGAGACCTACGAGGTGGACAATTGCCGGAGCGACAGCAACGGG
CATATGAACAGCATCAAGGACGAACTGGAGGACGACTCCGAGATCTTCGA
TTGCGAGCAGGCACTCCCCGTGACCACAGTGTTAGGGATTCCCCTGAATA
ACTCTGACGAAGCCAACAAGAGCCAGCGCTCGACGAATGGAGAAATGCCC
AATGGCAAGGGCTACAATCACTTTGCGGAAAGCTATCACCGACGACACCA
AAACCAGCCGGAGTACATCATCAGTAGTCCAATTGTTAATCCCATGAGGA
GCAATAAGCGTGGATCACAGCACTTGGACGATCATCCGTCGAAACGCCGA
GTCGACGACAGTCTGTCGATATCCGGATACTATCCAACACAACCTCTAGC
CCCCTTGCCACCGGCGTACGCCAAATTCCGGGGATTTGGCGAGTTCATGT
GCCCCTCCCTGTGCGATATGCCAGCGGCCACTGCCTTGCGCTTGGTGCAA
AA
MXO01388.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17383-PA | 1011 | CG17383-RA | 391..890 | 400..899 | 2450 | 99.6 | Plus |
CG17383-PB | 1011 | CG17383-RB | 391..890 | 400..899 | 2450 | 99.6 | Plus |
CG17383-PD | 1011 | CG17383-RD | 391..890 | 400..899 | 2450 | 99.6 | Plus |
CG17383-PC | 1011 | CG17383-RC | 391..890 | 400..899 | 2450 | 99.6 | Plus |
CG17383-PA | 1011 | CG17383-RA | 1..378 | 9..386 | 1890 | 100 | Plus |
CG17383-PB | 1011 | CG17383-RB | 1..378 | 9..386 | 1890 | 100 | Plus |
CG17383-PD | 1011 | CG17383-RD | 1..378 | 9..386 | 1890 | 100 | Plus |
CG17383-PC | 1011 | CG17383-RC | 1..378 | 9..386 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jigr1-RG | 1607 | CG17383-RG | 394..1283 | 9..899 | 4265 | 98.7 | Plus |
jigr1-RF | 1635 | CG17383-RF | 422..1311 | 9..899 | 4265 | 98.7 | Plus |
jigr1-RE | 1782 | CG17383-RE | 422..1311 | 9..899 | 4265 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25649563..25649926 | 536..899 | 1805 | 99.7 | Plus |
3R | 32079331 | 3R | 25649184..25649498 | 222..537 | 1380 | 96.5 | Plus |
3R | 32079331 | 3R | 25648899..25649112 | 9..222 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:35 has no hits.
MXO01388.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:11 Download gff for
MXO01388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17383-PD | 1..889 | 9..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:53 Download gff for
MXO01388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RE | 417..1310 | 1..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:55 Download gff for
MXO01388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RE | 417..1310 | 1..898 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:55 Download gff for
MXO01388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25648894..25649112 | 1..222 | 98 | -> | Plus |
3R | 25649185..25649497 | 223..536 | 96 | -> | Plus |
3R | 25649564..25649925 | 537..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:53 Download gff for
MXO01388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21474616..21474834 | 1..222 | 98 | -> | Plus |
arm_3R | 21474907..21475219 | 223..536 | 96 | -> | Plus |
arm_3R | 21475286..21475647 | 537..898 | 99 | | Plus |