Clone MXO01388 Report

Search the DGRC for MXO01388

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:88
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptjigr1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01388.3prime Sequence

726 bp (621 high quality bases) assembled on 2007-03-15

> MXO01388.3prime
ATGGTCTAGAAAGCTTGCCTTCTCGTCCTCCTCCTGCGACTCGCTGCTCT
GATCTACCGGATCGACCTCATCCGTCTTTTCTTTGCTGCCGCTGTCCTCG
TTGCGAAGCGAGGACTGGACCAATTCGCGGGTGAACTTCTGCACCAAGCG
CAAGGCAGTGGCCGCTGGCATATCGCACAGGGAGTGGCACATGAACTCGC
CAAATCCCCGGAATTTGGCGTACGCCGGTGGCAAGGGGGCTAGAGGTTGT
GTTGGATAGTATCCGGATATCGACAGACTGTCGTCGACTCGGCGTTTCGA
CGGATGATCGTCCAAGTGCTGTGATCCACGCTTATTGCTCCTCATGGGAT
TAACAATTGGACTACTGATGATGTACTCTTGCTGCCCCCCCCGTCGTCGG
TGATAGCTTTCCGCAAAGAGATTGTAGCCCTTGCCATTGGGCATTTCTCC
ATTCGTCGAGCGCTGGCTCTTGTTGGCTTCGTCAGAGTTATTCAGGGGAA
TCCCTAACACTGTGGTCACGGGGAGTGCCTGCTCGCAATCGAAGATCTCG
GAGTCGTCCTCCAGTTCGTCCTTGATGCTGTTCATATGCCCGTTGCTGTC
GCTCCGGCAATCGTCCACCTCGTAAGTCTCCTCATCCTCCTCCTTTACGC
TCATGTTCTTAAAGCTGCGCCTGGGCCGTATGTGAATCCCCAGAAACTGG
AGGCTTTCGAATAAAGGCCATTGTGA

MXO01388.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17383-PA 1011 CG17383-RA 652..1008 378..22 1785 100 Minus
CG17383-PB 1011 CG17383-RB 652..1008 378..22 1785 100 Minus
CG17383-PD 1011 CG17383-RD 652..1008 378..22 1785 100 Minus
CG17383-PC 1011 CG17383-RC 652..1008 378..22 1785 100 Minus
CG17383-PA 1011 CG17383-RA 304..637 726..393 1545 98.5 Minus
CG17383-PB 1011 CG17383-RB 304..637 726..393 1545 98.5 Minus
CG17383-PD 1011 CG17383-RD 304..637 726..393 1545 98.5 Minus
CG17383-PC 1011 CG17383-RC 304..637 726..393 1545 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-RG 1607 CG17383-RG 697..1401 726..22 3300 97.9 Minus
jigr1-RF 1635 CG17383-RF 725..1429 726..22 3300 97.9 Minus
jigr1-RE 1782 CG17383-RE 725..1429 726..22 3300 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25649563..25650044 503..22 2245 97.7 Minus
3R 32079331 3R 25649274..25649498 726..502 1065 98.2 Minus
Blast to na_te.dros performed on 2014-11-28 23:20:20 has no hits.

MXO01388.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:10 Download gff for MXO01388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17383-PD 305..1011 19..725 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:11 Download gff for MXO01388.3prime
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 726..1432 19..725 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:44 Download gff for MXO01388.3prime
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 726..1432 19..725 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:44 Download gff for MXO01388.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25649275..25649497 503..725 98 -> Minus
3R 25649564..25650047 19..502 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:11 Download gff for MXO01388.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21474997..21475219 503..725 98 -> Minus
arm_3R 21475286..21475769 19..502 97   Minus

MXO01388.5prime Sequence

902 bp (685 high quality bases) assembled on 2007-03-15

> MXO01388.5prime
CAGTCGACATGGAGAACCTGTCGCACTTGTATCCACCGCAGTTGCCAAAG
GGGCGTGGTCGGCCTCGAGCGACATACGCCCAAACGGGCGAGTTTGATCT
GGGTCTGATCCGGGAATACCGATCGCACCCAGTGCTGTACGATAGGTCAA
ACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCATATATGGGAACAGATA
GCCCACAAACTGGGCTACGATGCCACCAGTATAAGGGAACGGATGACCAC
GTTAAGGAATCGATATAACATCGAGAAGCGACGCGTCGAGAATGGCCTTT
CCACACAGTCTTCACAATGGCCTCTATTCGAAAGCCTCCAGTTTCTGGGG
GATCACATACGGCCCAGGCGCAGCTTTAAGAACATGTTCCCCCCCCGACG
AGGATGAGGAGACCTACGAGGTGGACAATTGCCGGAGCGACAGCAACGGG
CATATGAACAGCATCAAGGACGAACTGGAGGACGACTCCGAGATCTTCGA
TTGCGAGCAGGCACTCCCCGTGACCACAGTGTTAGGGATTCCCCTGAATA
ACTCTGACGAAGCCAACAAGAGCCAGCGCTCGACGAATGGAGAAATGCCC
AATGGCAAGGGCTACAATCACTTTGCGGAAAGCTATCACCGACGACACCA
AAACCAGCCGGAGTACATCATCAGTAGTCCAATTGTTAATCCCATGAGGA
GCAATAAGCGTGGATCACAGCACTTGGACGATCATCCGTCGAAACGCCGA
GTCGACGACAGTCTGTCGATATCCGGATACTATCCAACACAACCTCTAGC
CCCCTTGCCACCGGCGTACGCCAAATTCCGGGGATTTGGCGAGTTCATGT
GCCCCTCCCTGTGCGATATGCCAGCGGCCACTGCCTTGCGCTTGGTGCAA
AA

MXO01388.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17383-PA 1011 CG17383-RA 391..890 400..899 2450 99.6 Plus
CG17383-PB 1011 CG17383-RB 391..890 400..899 2450 99.6 Plus
CG17383-PD 1011 CG17383-RD 391..890 400..899 2450 99.6 Plus
CG17383-PC 1011 CG17383-RC 391..890 400..899 2450 99.6 Plus
CG17383-PA 1011 CG17383-RA 1..378 9..386 1890 100 Plus
CG17383-PB 1011 CG17383-RB 1..378 9..386 1890 100 Plus
CG17383-PD 1011 CG17383-RD 1..378 9..386 1890 100 Plus
CG17383-PC 1011 CG17383-RC 1..378 9..386 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-RG 1607 CG17383-RG 394..1283 9..899 4265 98.7 Plus
jigr1-RF 1635 CG17383-RF 422..1311 9..899 4265 98.7 Plus
jigr1-RE 1782 CG17383-RE 422..1311 9..899 4265 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25649563..25649926 536..899 1805 99.7 Plus
3R 32079331 3R 25649184..25649498 222..537 1380 96.5 Plus
3R 32079331 3R 25648899..25649112 9..222 1070 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:12:35 has no hits.

MXO01388.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:11 Download gff for MXO01388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17383-PD 1..889 9..898 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:53 Download gff for MXO01388.5prime
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 417..1310 1..898 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:55 Download gff for MXO01388.5prime
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 417..1310 1..898 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:55 Download gff for MXO01388.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25648894..25649112 1..222 98 -> Plus
3R 25649185..25649497 223..536 96 -> Plus
3R 25649564..25649925 537..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:53 Download gff for MXO01388.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21474616..21474834 1..222 98 -> Plus
arm_3R 21474907..21475219 223..536 96 -> Plus
arm_3R 21475286..21475647 537..898 99   Plus