MXO01389.3prime Sequence
734 bp (731 high quality bases) assembled on 2007-03-15
> MXO01389.3prime
ATGGTCTAGAAAGCTTGCTTTGGCCACCAGGGTCAGGTTTGTGGGCGCAG
TATCCGCCACGAGAATCAGTGGTCGGTTGACGGATGATGTCCTCGCAGTG
GCCAAGGACTCCTGATCCAGCCAGCGCTGCAGGTGCTGCTGATGTTGCAG
GTGATGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCATGTACATCAGAT
TGTCGTTGTAGACGGCATGCAGCTGGAGATTGAGGCTGTAGTTGCTGCCG
CTGTCGCTGTAGGTGGATGAGCTGCTCTCGTAACCGGAAACGGGCGATCC
TTTGGGGCAACAGAAGCCGGTGGGCGAGAGGGCGGGCGCCGAGAATGGGC
TGAGGGGCGTGGTGGCTTTGCTGGAGCTGCTTTTCCCCTGAAATTGCTGA
TTAGGACTCCCGCCGGCGACGGGAAATGTCTGCTGCTGTTGCATACTGGT
GGGGCACTGAAAGCTGCTGGTGATCGAACTGCCGGGCGATACACAGCCAC
CGGGATACGGATGGTTGCTCCAGATGATGGGTTCCCTTTGTTCGTTGATT
GCCGATGGCTTTTTCTTGAGGCGACGCTGTTTCTTGTCGGCCGCCTCCTT
GGAGTCCACCTCATCATCGTCGGCATAGCGGGACTCTTCCTCGTCGTCCT
GCTCCTCCTCGGCAGCTCCCTCATCCAAATCCTCCTGCCGATGGTGATGG
TGATGATGATGATGATCCTGCTCCTCATCATCGT
MXO01389.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9653-PA | 2115 | brk-RA | 1754..2112 | 380..22 | 1795 | 100 | Minus |
| CG9653-PA | 2115 | brk-RA | 1400..1747 | 734..387 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-RA | 3194 | CG9653-RA | 1934..2650 | 734..18 | 3510 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7309872..7310588 | 734..18 | 3510 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 21:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2480..2654 | 275..109 | 152 | 59.1 | Minus |
MXO01389.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:11 Download gff for
MXO01389.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9653-PA | 1400..2115 | 19..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:13 Download gff for
MXO01389.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1934..2652 | 15..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:04 Download gff for
MXO01389.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1934..2652 | 15..734 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:04 Download gff for
MXO01389.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7309872..7310590 | 15..734 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:13 Download gff for
MXO01389.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7203905..7204623 | 15..734 | 99 | | Minus |
MXO01389.5prime Sequence
889 bp (730 high quality bases) assembled on 2007-03-15
> MXO01389.5prime
CAGTCGACATGGTTCCACACCCCCTGGCCGCCCATCCCCACTTGCATGTC
CCGGTGGCAATGCATCCTCAAATGCAGCATCAGAAGGAGCAACAGCAGCA
GCAGCAGCAGTTGCAGCAGGAGCAGCAGCAACAGGATCAGCAGCAGTCAC
AGCAGGAGACACCTGCAACCATTGCTACCAATGGCAGCAATCAGGGATCC
TCGAATGTCCTTTCGGCGGCCAAAATAGCCGCTGTTGTTGCCGCCGCCAT
GGCCACCAGCAATGGCAATCCCACACCGACAGCAACAATCCCCGCCAGCA
GCAGCAGCAGCAGCAACACATTGCCGAGCAGCAATAACAGTAGTTGCCAC
AACAGCAGCAGCAGCAGCAATAGCTGCAACAGCAACCAAGTGCCCCCCAC
AAGTGCCAATCCTGAGCGGATCCCCTGAATCCACATCGTCAGCCAGTCAC
ATTCCACATGTGCCCTTTGCCTACCATCACAATCTGCATGGCTATTTGGA
GAATCGACTGGAGGCGGTTGCCACACCAGCCCCCATGGACCTCTCTCTCG
GATCCTCTGCCCGCCGTCAAATGCAGTTGCACGAAAAGGATCCATCTGGT
GTGGATCTCACTTTCCGCAAACGTAAGGTCATCACTAGTCCGATGCAGCC
GGATAAGATTAGTAAGCTGGAGGAGGTGATCAAGAAGGAGCCCGAAACGG
AAACGGAGAACGAGGATGTGGAGGTGGACGTGGAGACGGAGCAGCCGGAG
GAGCACAAGCTGCCCTCTAAACAGGTCAAGCTATTTAAGCCCTATTTGCT
GGACGATGATGAGGAGCAGGATCATCATCATCATCACCATCACCATCGGC
AGGAGGATTGGGATGAGGGAGCTGCCGAGGAGGAGCAAG
MXO01389.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9653-PA | 2115 | brk-RA | 996..1484 | 399..887 | 2370 | 99.3 | Plus |
| CG9653-PA | 2115 | brk-RA | 606..992 | 8..394 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-RA | 3194 | CG9653-RA | 1140..2018 | 8..887 | 4285 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7309078..7309956 | 8..887 | 4260 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:34:14 has no hits.
MXO01389.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:11 Download gff for
MXO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9653-PA | 600..1485 | 1..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:07 Download gff for
MXO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1134..2019 | 1..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:48 Download gff for
MXO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1134..2019 | 1..889 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:48 Download gff for
MXO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7309072..7309957 | 1..889 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:07 Download gff for
MXO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7203105..7203990 | 1..889 | 98 | | Plus |
