Clone MXO01390 Report

Search the DGRC for MXO01390

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:90
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7928-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01390.3prime Sequence

802 bp (735 high quality bases) assembled on 2007-03-15

> MXO01390.3prime
ATGGTCTAGAAAGCTTGCAACTGGCGTGCAGTCGTCTCTCTGAACGTGGG
CATCATAGTTCTGCTCGTTGATGAAAGTATGCGTGCACTTGGAGCAGTGG
AAGCGGCGATGGCGGTTGGTTCCGGGACTCTCGTGCTCCCGCAGATGGGC
CTTCATGTTGTACATCTGGGAGAAGCGCTTGTTGCACACCGGGCAGGCGA
AGGGCTTGTCCCCCGTGTGGGATCGCATGTGCCGCTCCAAGTGAGCCTTG
GTCCGGGTCTTGAAGCCGCACACCTGGCACTCCAGCCGTTTGGTCTCGCT
GTCGTGGATCATCTTGTGCTTGTACAGGGCCACCTTGTGAACGAATCGCT
TGGAGCAGACATCGCACTGGTATGGCGTTTCTCCCCACCGCCAGGCCATG
TGGTGCTTCAGCCGGAACTTGCGGCTAAAGCGTTCCGGGCACACTGGGCA
GGCGAACTGCTTCACGGGCTCGTGGTTCTGCAGGTGCCCTATGAACCCGG
AGTACGATTGCAGCGTCTTGCCGCACTGATCACAGACGTAGCCGGGAAAG
TGCTCGCGTTTCGTGTGGACATTGTAAGCGCGCCGGCTGCTGAACTTCTC
CGGGCAGCTGGGGCATTGTATGTTGACCGTGTATTCGCCGGAGCTTTCGT
TGTCCTGCTCCTGGTCCTCGCCATCGGATATTATGTACTCTATTGCGCCG
TCCAGATGTTCGTCAAAGTCACTCATGGTATCTTCCTTAAAAAAGTCTTC
CTCCTGGGCCTCTTGCTTGTCATGTGGCAACAGATCCTCCTCCTCTATCT
CG

MXO01390.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7928-PA 1374 CG7928-RA 588..1000 802..390 2065 100 Minus
CG7928-PA 1374 CG7928-RA 1009..1371 381..19 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7928-RA 1631 CG7928-RA 657..1440 802..19 3845 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30035431..30036214 19..802 3845 99.4 Plus
Blast to na_te.dros performed on 2014-11-28 22:03:14 has no hits.

MXO01390.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:12 Download gff for MXO01390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7928-PA 588..1374 18..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:59 Download gff for MXO01390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7928-RA 657..1444 13..802 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:25 Download gff for MXO01390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7928-RA 657..1444 13..802 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:25 Download gff for MXO01390.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30035427..30036214 13..802 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:59 Download gff for MXO01390.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25861149..25861936 13..802 98   Plus

MXO01390.5prime Sequence

878 bp (797 high quality bases) assembled on 2007-03-15

> MXO01390.5prime
CAGTCGACATGAATTGCTGCATTTGTCAATTCTCGGTACGCGTACCGAAG
GACATTCACACCGATACCGTCGGACATCCGCCGGTGCTGATCAGCGAACT
GGTACTGCAGTGCACCCGGGGCACGAATTACGTCCTCACGGAGGAATCGT
CGACGATCTGCAAGAAGTGCTGCGAGAAGCTCGCCAGATACCACAAGTCC
ATACAAATAGCGCGCAAGCTGCGAGGGGAGATCCTGGAACTGATCCACAG
TCCCTACATGTCCAAGGACCACAAGCAGACCTCCTACAAAGAGGACGATC
TCGACCGAGAGACCACCATAAGCAAATTCGATGGGAATATTGAGGAGGCA
CAGCAACAGGACGAGGAGGAGCAGGAACTGGATATCTTGCCCCCCCCCGT
CACCCTGGTCGGTCCCGCCGGAATCAAGGAGGAAGTGGCCGAAGAGGAGC
ACACCTTCATTATCAAACAATCAGAGGAGGAGGATGAGTTCCACTCCGTA
GACTTAGAGCTAGATATCGACAACGAGATTATCATTAACGAAGAGGAAGC
CCACGAGGTAGAGGAGGTGGCCCACGAGATAGAGGAGGTGGCCCACGAGA
TAGAGGAGGAGGATCTGTTGCCACATGACAAGCAAGAGGCCCAGGAGGAA
GACTTTTTTAAGGAAGATACCATGAGTGACTTTGACGAACATCTGGACGG
CGCAATAGAGTACATAATATCCGATGGCGAGGACCAGGAGCAGGACAACG
AAAGCTCCGGCGAATACACGGTCAACATACAATGCCCCAGCTGCCCGGAG
AAGTTCAGCAGCCGGCGCGCTTACAATGTCCACACGAAACGCGAGCACTT
TCCCGGCTACGTCTGTGATCAGTGCGGC

MXO01390.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7928-PA 1374 CG7928-RA 389..870 397..878 2335 99.3 Plus
CG7928-PA 1374 CG7928-RA 1..374 9..382 1870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7928-RA 1631 CG7928-RA 70..939 9..878 4200 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30035932..30036801 878..9 4200 98.9 Minus
Blast to na_te.dros performed on 2014-11-28 18:40:37 has no hits.

MXO01390.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:12 Download gff for MXO01390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7928-PA 1..870 9..878 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:43 Download gff for MXO01390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7928-RA 61..939 1..878 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:35 Download gff for MXO01390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7928-RA 61..939 1..878 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:35 Download gff for MXO01390.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30035932..30036810 1..878 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:43 Download gff for MXO01390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25861654..25862532 1..878 98   Minus