Clone MXO01391 Report

Search the DGRC for MXO01391

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:91
Vector:pMK33-CTAP-BD
Associated Gene/Transcripten-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01391.3prime Sequence

734 bp (713 high quality bases) assembled on 2007-03-15

> MXO01391.3prime
ATGGTCTAGAAAGCTTGCGGGGATCTGCCCGTTCATGCGCATCTCGAGCT
CCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGG
GCCATCAGCTGCAGTGCCAGCGGATTTTTGGAGCCCGTCGACTTCTTGAT
CTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGGC
CCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
TCGTTGAACTCCCGCTTAAGGCGGGCCAACTGCTCGCTGGAGAACGCGGT
GCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGC
GGTAGCGGGGTCCTGAGCTGGGACGATCGCTGTACCCCCCGCAGTACACC
CAGGCGGGCCACATCTCAATCTTGCCGCCCTCTGTGGTGGTGGATCCCGT
CTCGGAACGCGTGTCATCCGAGGACTCCATTCCGGAATCTCGGCTAACGG
CGGATGGCGGCGGGATTGGCTGCGGCTGGGGACTGCTGGCATTGACTCCG
GATCCACTGGCTCCCAGTCGGCTACTGGGCGAGGAGTTCAAGGAACTGGC
CGCCGAGGAGCAACCCGACGAGGAGGAGCTCGAGCTGGTGGCCACGGAAG
AGGTGCTGCTAATGGTCGAGGCATTGGAGGCGGTTGGCGGACTGGCCAAG
CTGCTGGCACTGCTACTCAGCGGAGGTTGGGTCA

MXO01391.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9015-PB 1659 en-RB 1291..1656 384..19 1830 100 Minus
CG9015-PA 1659 en-RA 1291..1656 384..19 1830 100 Minus
CG9015-PB 1659 en-RB 941..1284 734..391 1645 99.1 Minus
CG9015-PA 1659 en-RA 941..1284 734..391 1645 99.1 Minus
CG17835-PD 1731 inv-RD 1528..1575 198..151 215 97.9 Minus
CG17835-PC 1731 inv-RC 1528..1575 198..151 215 97.9 Minus
CG17835-PA 1731 inv-RA 1528..1575 198..151 215 97.9 Minus
CG17835-PB 1731 inv-RB 1528..1575 198..151 215 97.9 Minus
CG17835-PD 1731 inv-RD 1600..1644 126..82 175 95.5 Minus
CG17835-PC 1731 inv-RC 1600..1644 126..82 175 95.5 Minus
CG17835-PA 1731 inv-RA 1600..1644 126..82 175 95.5 Minus
CG17835-PB 1731 inv-RB 1600..1644 126..82 175 95.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 2465 CG9015-RA 1154..1869 734..19 3460 98.9 Minus
en-RB 2792 CG9015-RB 1481..2196 734..19 3460 98.9 Minus
inv-RE 4776 CG17835-RE 1711..1947 283..47 705 86.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11526358..11526730 362..734 1745 97.9 Plus
2R 25286936 2R 11524602..11524849 19..266 1240 100 Plus
2R 25286936 2R 11506652..11506866 261..47 670 87.4 Minus
2R 25286936 2R 11525128..11525228 265..365 505 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:07:15 has no hits.

MXO01391.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:13 Download gff for MXO01391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PA 942..1659 15..733 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:22 Download gff for MXO01391.3prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 1482..2201 13..733 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:11 Download gff for MXO01391.3prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 1482..2201 13..733 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:11 Download gff for MXO01391.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11524597..11524847 13..264 99 <- Plus
2R 11525128..11525225 265..362 100 <- Plus
2R 11526359..11526729 363..733 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:22 Download gff for MXO01391.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7412633..7412730 265..362 100 <- Plus
arm_2R 7412102..7412352 13..264 99 <- Plus
arm_2R 7413864..7414234 363..733 97   Plus

MXO01391.5prime Sequence

691 bp (690 high quality bases) assembled on 2007-03-15

> MXO01391.5prime
CAGTCGACATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAGCGCCCAGC
CCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAGCAGCAGCA
GCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCAACTGCAGC
AGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATCCGGCAATG
GCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCTGCGGCCGC
CCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAGTGGATCGC
CCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCATCAAGGAG
GAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCTCACCCCCCCCCC
ACACCACCAACGAGGAGGAGGAGGAGGAGGAGGATGACGACATTGATGTG
GATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCGCCCACCA
GCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCCAACATCC
TGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGATGGAGAAC
CAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGACTGCCAC
GCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCC

MXO01391.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9015-PB 1659 en-RB 1..379 9..387 1895 100 Plus
CG9015-PA 1659 en-RA 1..379 9..387 1895 100 Plus
CG9015-PB 1659 en-RB 391..682 400..691 1435 99.6 Plus
CG9015-PA 1659 en-RA 391..682 400..691 1435 99.6 Plus
CG15745-PA 1119 CG15745-RA 877..903 415..441 135 100 Plus
CG15745-PB 1701 CG15745-RB 1459..1485 415..441 135 100 Plus
CG5460-PB 3180 H-RB 2758..2784 219..245 135 100 Plus
CG5460-PC 3180 H-RC 2758..2784 219..245 135 100 Plus
CG5460-PA 3234 H-RA 2812..2838 219..245 135 100 Plus
CG5460-PD 3234 H-RD 2812..2838 219..245 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 2465 CG9015-RA 214..895 9..691 3270 98.7 Plus
en-RB 2792 CG9015-RB 541..1222 9..691 3270 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11526989..11527670 691..9 3245 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 19:08:34 has no hits.

MXO01391.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:13 Download gff for MXO01391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PA 1..682 9..691 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:49 Download gff for MXO01391.5prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..1222 9..691 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:01 Download gff for MXO01391.5prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..1222 9..691 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:01 Download gff for MXO01391.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11526989..11527670 9..691 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:49 Download gff for MXO01391.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7414494..7415175 9..691 98   Minus