MXO01391.3prime Sequence
734 bp (713 high quality bases) assembled on 2007-03-15
> MXO01391.3prime
ATGGTCTAGAAAGCTTGCGGGGATCTGCCCGTTCATGCGCATCTCGAGCT
CCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGG
GCCATCAGCTGCAGTGCCAGCGGATTTTTGGAGCCCGTCGACTTCTTGAT
CTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGGC
CCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
TCGTTGAACTCCCGCTTAAGGCGGGCCAACTGCTCGCTGGAGAACGCGGT
GCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGC
GGTAGCGGGGTCCTGAGCTGGGACGATCGCTGTACCCCCCGCAGTACACC
CAGGCGGGCCACATCTCAATCTTGCCGCCCTCTGTGGTGGTGGATCCCGT
CTCGGAACGCGTGTCATCCGAGGACTCCATTCCGGAATCTCGGCTAACGG
CGGATGGCGGCGGGATTGGCTGCGGCTGGGGACTGCTGGCATTGACTCCG
GATCCACTGGCTCCCAGTCGGCTACTGGGCGAGGAGTTCAAGGAACTGGC
CGCCGAGGAGCAACCCGACGAGGAGGAGCTCGAGCTGGTGGCCACGGAAG
AGGTGCTGCTAATGGTCGAGGCATTGGAGGCGGTTGGCGGACTGGCCAAG
CTGCTGGCACTGCTACTCAGCGGAGGTTGGGTCA
MXO01391.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9015-PB | 1659 | en-RB | 1291..1656 | 384..19 | 1830 | 100 | Minus |
CG9015-PA | 1659 | en-RA | 1291..1656 | 384..19 | 1830 | 100 | Minus |
CG9015-PB | 1659 | en-RB | 941..1284 | 734..391 | 1645 | 99.1 | Minus |
CG9015-PA | 1659 | en-RA | 941..1284 | 734..391 | 1645 | 99.1 | Minus |
CG17835-PD | 1731 | inv-RD | 1528..1575 | 198..151 | 215 | 97.9 | Minus |
CG17835-PC | 1731 | inv-RC | 1528..1575 | 198..151 | 215 | 97.9 | Minus |
CG17835-PA | 1731 | inv-RA | 1528..1575 | 198..151 | 215 | 97.9 | Minus |
CG17835-PB | 1731 | inv-RB | 1528..1575 | 198..151 | 215 | 97.9 | Minus |
CG17835-PD | 1731 | inv-RD | 1600..1644 | 126..82 | 175 | 95.5 | Minus |
CG17835-PC | 1731 | inv-RC | 1600..1644 | 126..82 | 175 | 95.5 | Minus |
CG17835-PA | 1731 | inv-RA | 1600..1644 | 126..82 | 175 | 95.5 | Minus |
CG17835-PB | 1731 | inv-RB | 1600..1644 | 126..82 | 175 | 95.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
en-RA | 2465 | CG9015-RA | 1154..1869 | 734..19 | 3460 | 98.9 | Minus |
en-RB | 2792 | CG9015-RB | 1481..2196 | 734..19 | 3460 | 98.9 | Minus |
inv-RE | 4776 | CG17835-RE | 1711..1947 | 283..47 | 705 | 86.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11526358..11526730 | 362..734 | 1745 | 97.9 | Plus |
2R | 25286936 | 2R | 11524602..11524849 | 19..266 | 1240 | 100 | Plus |
2R | 25286936 | 2R | 11506652..11506866 | 261..47 | 670 | 87.4 | Minus |
2R | 25286936 | 2R | 11525128..11525228 | 265..365 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:07:15 has no hits.
MXO01391.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:13 Download gff for
MXO01391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9015-PA | 942..1659 | 15..733 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:22 Download gff for
MXO01391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 1482..2201 | 13..733 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:11 Download gff for
MXO01391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 1482..2201 | 13..733 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:11 Download gff for
MXO01391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11524597..11524847 | 13..264 | 99 | <- | Plus |
2R | 11525128..11525225 | 265..362 | 100 | <- | Plus |
2R | 11526359..11526729 | 363..733 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:22 Download gff for
MXO01391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7412633..7412730 | 265..362 | 100 | <- | Plus |
arm_2R | 7412102..7412352 | 13..264 | 99 | <- | Plus |
arm_2R | 7413864..7414234 | 363..733 | 97 | | Plus |
MXO01391.5prime Sequence
691 bp (690 high quality bases) assembled on 2007-03-15
> MXO01391.5prime
CAGTCGACATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAGCGCCCAGC
CCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAGCAGCAGCA
GCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCAACTGCAGC
AGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATCCGGCAATG
GCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCTGCGGCCGC
CCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAGTGGATCGC
CCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCATCAAGGAG
GAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCTCACCCCCCCCCC
ACACCACCAACGAGGAGGAGGAGGAGGAGGAGGATGACGACATTGATGTG
GATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCGCCCACCA
GCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCCAACATCC
TGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGATGGAGAAC
CAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGACTGCCAC
GCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCC
MXO01391.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9015-PB | 1659 | en-RB | 1..379 | 9..387 | 1895 | 100 | Plus |
CG9015-PA | 1659 | en-RA | 1..379 | 9..387 | 1895 | 100 | Plus |
CG9015-PB | 1659 | en-RB | 391..682 | 400..691 | 1435 | 99.6 | Plus |
CG9015-PA | 1659 | en-RA | 391..682 | 400..691 | 1435 | 99.6 | Plus |
CG15745-PA | 1119 | CG15745-RA | 877..903 | 415..441 | 135 | 100 | Plus |
CG15745-PB | 1701 | CG15745-RB | 1459..1485 | 415..441 | 135 | 100 | Plus |
CG5460-PB | 3180 | H-RB | 2758..2784 | 219..245 | 135 | 100 | Plus |
CG5460-PC | 3180 | H-RC | 2758..2784 | 219..245 | 135 | 100 | Plus |
CG5460-PA | 3234 | H-RA | 2812..2838 | 219..245 | 135 | 100 | Plus |
CG5460-PD | 3234 | H-RD | 2812..2838 | 219..245 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
en-RA | 2465 | CG9015-RA | 214..895 | 9..691 | 3270 | 98.7 | Plus |
en-RB | 2792 | CG9015-RB | 541..1222 | 9..691 | 3270 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11526989..11527670 | 691..9 | 3245 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:34 has no hits.
MXO01391.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:13 Download gff for
MXO01391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9015-PA | 1..682 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:49 Download gff for
MXO01391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 541..1222 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:01 Download gff for
MXO01391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 541..1222 | 9..691 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:01 Download gff for
MXO01391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11526989..11527670 | 9..691 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:49 Download gff for
MXO01391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7414494..7415175 | 9..691 | 98 | | Minus |