Clone MXO01392 Report

Search the DGRC for MXO01392

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:92
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptcact-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01392.3prime Sequence

892 bp (707 high quality bases) assembled on 2007-03-15

> MXO01392.3prime
ATGGTCTAGAAAGCTTGCGGCAACTGTCATGGGATTGCCACCGTTGTAGC
TGACAAAATAGCGAGGATCACCAAAGCGATCGTACATCTTCGTATCGTCT
AGATCTTCGATATCGCTACTGTCGTAATCACTGTCCGGAGGCGTTACGGT
CTCCGCTCCGCGCTTCTCCAGGATGTTCTGCATGCGCGACTTGTTCATGA
TGCACGCAAACTGGTAGGCCGTCAAGCCGGCGTAGGTGGCCGTTTCCAGG
TTCAGCTTCTCGCACTCATCGAGCAGGAAGTTGGCCAGATCCTCGTTGCA
GCCCTCGATCGCAATGTGCAGCGGTGTGCGGCCCGATTTTCCCTCCCTGG
CGTTAATGTCTGCTCCATGGGATACCAAAATGCGTAAGATATCAATGTGA
CCCGCCTCGGCGGCCAAATGCACACAGCGTTCTCCATCGTAGTTGCGAAT
CTCCAGATCGGCGGGCAGGCAGGCGTAGCTCAGGGAACTGACCGCTTTGT
CGTTGGATCGGTGTCCATATTGTCGGTGGGCCTCATGGATTTCCGTGGCG
CCGAACTTCTCTGTCAAGGCACGGACGCACTGTTTCTCTCCGGCGATGCA
GGAAAGATGCAGAGCTGTGTTTCCATGACGATCGCGCACCGTGGGCTCAG
CTCCGGCGAGTAAAAGTATCCTCATGATGTTCGGCTGGGCAGTAAGAGCG
GCCAGATGAAGGGGTGTCTGGGCCACATCGTTCTGGATGTTGAGCAGGCA
CGGATGAGGAGCCATGCGAATCAGGGCGGCCACCACGTCCACTGATCCCG
AAATACAGGCCAGGTGCAAAGGTGTGTCGCCGTCGTCGTTTTGTTGATAG
AACTGCTCCCAGGCGTTCATGATATTAATGCTGCTGGGCGGA

MXO01392.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5848-PA 1503 cact-RA 627..1500 892..19 4370 100 Minus
CG5848-PB 1503 cact-RB 627..1500 892..19 4370 100 Minus
CG5848-PD 1503 cact-RD 627..1500 892..19 4370 100 Minus
CG5848-PC 1449 cact-RC 627..1431 892..88 4025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1999 CG5848-RE 841..1714 892..19 4370 100 Minus
cact-RD 2178 CG5848-RD 1020..1893 892..19 4370 100 Minus
cact-RB 2005 CG5848-RB 786..1659 892..19 4370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16314451..16314709 88..346 1295 100 Plus
2L 23513712 2L 16322959..16323172 434..647 1070 100 Plus
2L 23513712 2L 16323340..16323517 646..823 890 100 Plus
2L 23513712 2L 16314769..16314859 345..435 455 100 Plus
2L 23513712 2L 16313382..16313452 19..89 355 100 Plus
2L 23513712 2L 16324333..16324401 824..892 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:40:41 has no hits.

MXO01392.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:14 Download gff for MXO01392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5848-PD 628..1503 16..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:45 Download gff for MXO01392.3prime
Subject Subject Range Query Range Percent Splice Strand
cact-RB 787..1663 15..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:37 Download gff for MXO01392.3prime
Subject Subject Range Query Range Percent Splice Strand
cact-RB 787..1663 15..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:37 Download gff for MXO01392.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16313378..16313450 15..87 97 <- Plus
2L 16314451..16314708 88..345 100 <- Plus
2L 16314770..16314858 346..434 100 <- Plus
2L 16322960..16323170 435..645 100 <- Plus
2L 16323340..16323517 646..823 100 <- Plus
2L 16324333..16324400 824..891 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:45 Download gff for MXO01392.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16313378..16313450 15..87 97 <- Plus
arm_2L 16314451..16314708 88..345 100 <- Plus
arm_2L 16314770..16314858 346..434 100 <- Plus
arm_2L 16322960..16323170 435..645 100 <- Plus
arm_2L 16323340..16323517 646..823 100 <- Plus
arm_2L 16324333..16324400 824..891 100   Plus

MXO01392.5prime Sequence

853 bp (790 high quality bases) assembled on 2007-03-15

> MXO01392.5prime
CAGTCGACATGCCGAGCCCAACAAAAGCAGCGGAGGCAGCAACAAAGGCA
ACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAGCAGCGCGC
CCCCTCAAACGCGGCTAACCCCTCGTCCTCACTAGCCACTAGCGGTAAAA
TTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGCAAAAGGAA
TTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCCGGCCCGCA
ATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGAGGAACAGG
ATAAGGATCAGCAGGAGTCGGCACCCCAAAAGGAACAGCCCGTTGTCCTC
GATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCACGACCAAAG
AGGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAATGCGACTC
AAACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAAGCCATTT
GGTCAGTCGCGGCGAACAGCTTAACAATCTCGGCCAGAGCAGCAGCACCC
AAATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCACGGCGAAC
GCGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCAGCAGCAT
TAATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGACGACGGCG
ACACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGTGGTGGCC
GCCCTGATTCGCATGGCTCCTCATCCGTGCCTGCTCAACATCCAGAACGA
TGTGGCCCAGACACCCCTTCATCTGGCCGCTCTTACTGCCCAGCCGAACA
TCA

MXO01392.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5848-PA 1503 cact-RA 388..844 397..853 2285 100 Plus
CG5848-PB 1503 cact-RB 388..844 397..853 2285 100 Plus
CG5848-PC 1449 cact-RC 388..844 397..853 2285 100 Plus
CG5848-PD 1503 cact-RD 388..844 397..853 2285 100 Plus
CG5848-PA 1503 cact-RA 1..383 9..391 1915 100 Plus
CG5848-PB 1503 cact-RB 1..383 9..391 1915 100 Plus
CG5848-PC 1449 cact-RC 1..383 9..391 1915 100 Plus
CG5848-PD 1503 cact-RD 1..383 9..391 1915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1999 CG5848-RE 215..1058 9..853 4170 99.6 Plus
cact-RD 2178 CG5848-RD 394..1237 9..853 4170 99.6 Plus
cact-RC 2356 CG5848-RC 160..1003 9..853 4170 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16324333..16325027 704..9 3400 99.6 Minus
2L 23513712 2L 16323369..16323517 853..705 745 100 Minus
Blast to na_te.dros performed 2014-11-28 22:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6845 19..77 132 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2420 19..84 122 68.7 Plus

MXO01392.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:14 Download gff for MXO01392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5848-PC 1..843 9..852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:02 Download gff for MXO01392.5prime
Subject Subject Range Query Range Percent Splice Strand
cact-RC 153..1002 1..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:27 Download gff for MXO01392.5prime
Subject Subject Range Query Range Percent Splice Strand
cact-RC 153..1002 1..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:27 Download gff for MXO01392.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16323370..16323517 705..852 100 <- Minus
2L 16324333..16325034 1..704 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:02 Download gff for MXO01392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16323370..16323517 705..852 100 <- Minus
arm_2L 16324333..16325034 1..704 99   Minus