MXO01392.3prime Sequence
892 bp (707 high quality bases) assembled on 2007-03-15
> MXO01392.3prime
ATGGTCTAGAAAGCTTGCGGCAACTGTCATGGGATTGCCACCGTTGTAGC
TGACAAAATAGCGAGGATCACCAAAGCGATCGTACATCTTCGTATCGTCT
AGATCTTCGATATCGCTACTGTCGTAATCACTGTCCGGAGGCGTTACGGT
CTCCGCTCCGCGCTTCTCCAGGATGTTCTGCATGCGCGACTTGTTCATGA
TGCACGCAAACTGGTAGGCCGTCAAGCCGGCGTAGGTGGCCGTTTCCAGG
TTCAGCTTCTCGCACTCATCGAGCAGGAAGTTGGCCAGATCCTCGTTGCA
GCCCTCGATCGCAATGTGCAGCGGTGTGCGGCCCGATTTTCCCTCCCTGG
CGTTAATGTCTGCTCCATGGGATACCAAAATGCGTAAGATATCAATGTGA
CCCGCCTCGGCGGCCAAATGCACACAGCGTTCTCCATCGTAGTTGCGAAT
CTCCAGATCGGCGGGCAGGCAGGCGTAGCTCAGGGAACTGACCGCTTTGT
CGTTGGATCGGTGTCCATATTGTCGGTGGGCCTCATGGATTTCCGTGGCG
CCGAACTTCTCTGTCAAGGCACGGACGCACTGTTTCTCTCCGGCGATGCA
GGAAAGATGCAGAGCTGTGTTTCCATGACGATCGCGCACCGTGGGCTCAG
CTCCGGCGAGTAAAAGTATCCTCATGATGTTCGGCTGGGCAGTAAGAGCG
GCCAGATGAAGGGGTGTCTGGGCCACATCGTTCTGGATGTTGAGCAGGCA
CGGATGAGGAGCCATGCGAATCAGGGCGGCCACCACGTCCACTGATCCCG
AAATACAGGCCAGGTGCAAAGGTGTGTCGCCGTCGTCGTTTTGTTGATAG
AACTGCTCCCAGGCGTTCATGATATTAATGCTGCTGGGCGGA
MXO01392.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5848-PA | 1503 | cact-RA | 627..1500 | 892..19 | 4370 | 100 | Minus |
CG5848-PB | 1503 | cact-RB | 627..1500 | 892..19 | 4370 | 100 | Minus |
CG5848-PD | 1503 | cact-RD | 627..1500 | 892..19 | 4370 | 100 | Minus |
CG5848-PC | 1449 | cact-RC | 627..1431 | 892..88 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cact-RE | 1999 | CG5848-RE | 841..1714 | 892..19 | 4370 | 100 | Minus |
cact-RD | 2178 | CG5848-RD | 1020..1893 | 892..19 | 4370 | 100 | Minus |
cact-RB | 2005 | CG5848-RB | 786..1659 | 892..19 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16314451..16314709 | 88..346 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 16322959..16323172 | 434..647 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 16323340..16323517 | 646..823 | 890 | 100 | Plus |
2L | 23513712 | 2L | 16314769..16314859 | 345..435 | 455 | 100 | Plus |
2L | 23513712 | 2L | 16313382..16313452 | 19..89 | 355 | 100 | Plus |
2L | 23513712 | 2L | 16324333..16324401 | 824..892 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:40:41 has no hits.
MXO01392.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:14 Download gff for
MXO01392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5848-PD | 628..1503 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:45 Download gff for
MXO01392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RB | 787..1663 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:37 Download gff for
MXO01392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RB | 787..1663 | 15..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:37 Download gff for
MXO01392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16313378..16313450 | 15..87 | 97 | <- | Plus |
2L | 16314451..16314708 | 88..345 | 100 | <- | Plus |
2L | 16314770..16314858 | 346..434 | 100 | <- | Plus |
2L | 16322960..16323170 | 435..645 | 100 | <- | Plus |
2L | 16323340..16323517 | 646..823 | 100 | <- | Plus |
2L | 16324333..16324400 | 824..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:45 Download gff for
MXO01392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16313378..16313450 | 15..87 | 97 | <- | Plus |
arm_2L | 16314451..16314708 | 88..345 | 100 | <- | Plus |
arm_2L | 16314770..16314858 | 346..434 | 100 | <- | Plus |
arm_2L | 16322960..16323170 | 435..645 | 100 | <- | Plus |
arm_2L | 16323340..16323517 | 646..823 | 100 | <- | Plus |
arm_2L | 16324333..16324400 | 824..891 | 100 | | Plus |
MXO01392.5prime Sequence
853 bp (790 high quality bases) assembled on 2007-03-15
> MXO01392.5prime
CAGTCGACATGCCGAGCCCAACAAAAGCAGCGGAGGCAGCAACAAAGGCA
ACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAGCAGCGCGC
CCCCTCAAACGCGGCTAACCCCTCGTCCTCACTAGCCACTAGCGGTAAAA
TTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGCAAAAGGAA
TTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCCGGCCCGCA
ATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGAGGAACAGG
ATAAGGATCAGCAGGAGTCGGCACCCCAAAAGGAACAGCCCGTTGTCCTC
GATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCACGACCAAAG
AGGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAATGCGACTC
AAACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAAGCCATTT
GGTCAGTCGCGGCGAACAGCTTAACAATCTCGGCCAGAGCAGCAGCACCC
AAATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCACGGCGAAC
GCGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCAGCAGCAT
TAATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGACGACGGCG
ACACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGTGGTGGCC
GCCCTGATTCGCATGGCTCCTCATCCGTGCCTGCTCAACATCCAGAACGA
TGTGGCCCAGACACCCCTTCATCTGGCCGCTCTTACTGCCCAGCCGAACA
TCA
MXO01392.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5848-PA | 1503 | cact-RA | 388..844 | 397..853 | 2285 | 100 | Plus |
CG5848-PB | 1503 | cact-RB | 388..844 | 397..853 | 2285 | 100 | Plus |
CG5848-PC | 1449 | cact-RC | 388..844 | 397..853 | 2285 | 100 | Plus |
CG5848-PD | 1503 | cact-RD | 388..844 | 397..853 | 2285 | 100 | Plus |
CG5848-PA | 1503 | cact-RA | 1..383 | 9..391 | 1915 | 100 | Plus |
CG5848-PB | 1503 | cact-RB | 1..383 | 9..391 | 1915 | 100 | Plus |
CG5848-PC | 1449 | cact-RC | 1..383 | 9..391 | 1915 | 100 | Plus |
CG5848-PD | 1503 | cact-RD | 1..383 | 9..391 | 1915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cact-RE | 1999 | CG5848-RE | 215..1058 | 9..853 | 4170 | 99.6 | Plus |
cact-RD | 2178 | CG5848-RD | 394..1237 | 9..853 | 4170 | 99.6 | Plus |
cact-RC | 2356 | CG5848-RC | 160..1003 | 9..853 | 4170 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16324333..16325027 | 704..9 | 3400 | 99.6 | Minus |
2L | 23513712 | 2L | 16323369..16323517 | 853..705 | 745 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6845 | 19..77 | 132 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2420 | 19..84 | 122 | 68.7 | Plus |
MXO01392.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:14 Download gff for
MXO01392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5848-PC | 1..843 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:02 Download gff for
MXO01392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RC | 153..1002 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:27 Download gff for
MXO01392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RC | 153..1002 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:27 Download gff for
MXO01392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16323370..16323517 | 705..852 | 100 | <- | Minus |
2L | 16324333..16325034 | 1..704 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:02 Download gff for
MXO01392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16323370..16323517 | 705..852 | 100 | <- | Minus |
arm_2L | 16324333..16325034 | 1..704 | 99 | | Minus |