MXO01393.3prime Sequence
834 bp (789 high quality bases) assembled on 2007-03-15
> MXO01393.3prime
ATGGTCTAGAAAGCTTGCGTAGGTGAAAAGCATCTCGATGGGTTCCGCCT
CGGCACCCTCCGTCGCATTTACGGACGCCTGGAGCTTGTGCGCTCGCATA
TGAGCGGATAGACCTGCCGCCTGGGCATAGGCATTACCGCAGATCTTGCA
CTTGAACTTCTTGATGCCCAAATGCAGATGCTTGTGGTGATAGAGCGCCT
TCGGGCGGGAGAAGGCCGAATCACATTTGTCGCACTTGTAGGGCTTCTCG
GTGGAATGCATGGCCTGGTGCTCGTTGAGCAGCGACTTGGAGGCAAAGCG
GCGGGCACAGGTCTGGCACTGGAAGGGTTTCTCGCCCGTATGCGTGCGCC
GGTGGACGATCAACGCCTCCCGGTAGCGGGATCTATAGCCGCACAGCTCG
CACACGTAGTTCCGCTCCTCGCTGTGGACCCGCCGATGCGAGGTGAGGTT
GTGCTGGTTGACAAACGACTTGCCGCAGTTCTCGTGCTCACACTTGAATG
TCCTGGCGCCGGAGTGACCCTGCACATGGCGAAGAAGGGATCGCGAGCTT
TTGAACACCTTGTCGCATAGCTGGCAGGCGAACTCCGTGTGCTCCTTGCG
ACGATGCTGGGCCAATGCTCGGTCCACATCGAAGGTGGCTTTGCAGTCGA
CGCACTTGAAGGCCTGCGGAAACGGATGGCTCATCTTTAGGTGGGTGTTT
AGGTATTTCTGCGTCGTGTACCTCCTGTCGCAGTGTGGGCAGTTGTAGTC
CTTTGGTTGGCGCTGCTTCTTAAAAACAGACTGGTGCTCCTCCCCGTCCT
CATCCGGTTGATAGTCTTGCGGATTTTCCACGCC
MXO01393.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10959-PA | 1332 | CG10959-RA | 514..1329 | 834..19 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10959-RA | 1836 | CG10959-RA | 629..1444 | 834..19 | 4080 | 100 | Minus |
| CG10959-RB | 1830 | CG10959-RB | 629..1438 | 834..19 | 3980 | 99.3 | Minus |
| CG2129-RA | 2017 | CG2129-RA | 1357..1462 | 215..110 | 200 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8149543..8150294 | 770..19 | 3760 | 100 | Minus |
| X | 23542271 | X | 8149411..8149476 | 834..769 | 330 | 100 | Minus |
| X | 23542271 | X | 8147195..8147300 | 215..110 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:24 has no hits.
MXO01393.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:14 Download gff for
MXO01393.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-PA | 514..1332 | 16..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:11 Download gff for
MXO01393.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 629..1444 | 19..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:53 Download gff for
MXO01393.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 629..1444 | 19..834 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:53 Download gff for
MXO01393.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8149411..8149476 | 769..834 | 100 | -> | Minus |
| X | 8149545..8150294 | 19..768 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:11 Download gff for
MXO01393.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8043444..8043509 | 769..834 | 100 | -> | Minus |
| arm_X | 8043578..8044327 | 19..768 | 100 | | Minus |
MXO01393.5prime Sequence
846 bp (599 high quality bases) assembled on 2007-03-15
> MXO01393.5prime
CAGTCGACATGTTGAGACACTGCCTCGCCAACGTCGACTACGTCCGCCTG
CACGCCCAGCAGCAGTTGCGTCCCAAATGCGGCGAGATCTTCTACGAACC
GGAGGCGAATAGATTCCAACTGGTCTGCCTGCTCTGCGACATGAAGCACT
TTGGATTCGAGGACTTCGCCCGCCATATCCGTAATGTGCACTTCGACAAG
CAGGGCCGACCGCTCACCAAGACGGTCACGGGACTGGGCAGACTAGCACG
AGAGGAACAGGAGTTCCAAGGGGTCAGCGCAGAACCATTGGCTGTGGACA
GCTTCAAGAAAGAGTACCTGCCCAACGAGGATGTTCTGTCGGAGGAGGAG
GACGCGGAACAGGAGCTGGGACTGGAACAGGACTTTGGCCCCCCACTACG
CATCATGGTGCTCGGGGGTAAACAGTCCGTGGACGAGGAGACCATCGATA
CGATGTGGCAGCCGGATCATGACAGTTCCTCCGCATCCGTCAACGAGGGG
TGCGCTCTGGAGGCTCTGTTGGGCGTGGAAAATCCGCAAGACTATCAACC
GGATGAGGACGGGGAGGAGCACCAGTCTGTTTTTAAGAAGCAGCGCCAAC
CAAAGGACTACAACTGCCCACACTGCGACAGGAGGTACACGACGCAGAAA
TACCTAAACACCCACCTAAAGATGAGCCATCCGTTTCCGCAGGCCTTCAA
GTGCGTCGACTGCAAAGCCACCTTCGATGTGGACCGAGCATTGGCCCAGC
ATCGTCGCAAGGAGCACACGGAGTTCGCCTGGCAGCTATGCGACAAGGTG
TTCAAAAGCTCGCGATCCCTTCTTCGCCATGTGCAGGGTCACTCCG
MXO01393.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10959-PA | 1332 | CG10959-RA | 385..838 | 393..846 | 2245 | 99.7 | Plus |
| CG10959-PA | 1332 | CG10959-RA | 1..375 | 9..383 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10959-RA | 1836 | CG10959-RA | 116..953 | 9..846 | 4085 | 99.2 | Plus |
| CG10959-RB | 1830 | CG10959-RB | 116..947 | 9..846 | 3985 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8148898..8149476 | 9..587 | 2805 | 99 | Plus |
| X | 23542271 | X | 8149543..8149803 | 586..846 | 1290 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:24 has no hits.
MXO01393.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:15 Download gff for
MXO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-PA | 1..838 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:20 Download gff for
MXO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 110..953 | 1..846 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:16 Download gff for
MXO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 110..953 | 1..846 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:16 Download gff for
MXO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8148892..8149476 | 1..587 | 98 | -> | Plus |
| X | 8149545..8149803 | 588..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:20 Download gff for
MXO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8042925..8043509 | 1..587 | 98 | -> | Plus |
| arm_X | 8043578..8043836 | 588..846 | 99 | | Plus |
