MXO01394.5prime Sequence
817 bp (710 high quality bases) assembled on 2007-03-15
> MXO01394.5prime
CAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGCACAATATC
GGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCCGGATGCAA
CAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACGCGCCTGGC
ACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCACCGACAAA
TGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTCTTCAGACG
TTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCCATCGGATC
TAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCTTCACCTGC
TGCATCTGCCGCAAGCAATTGAGCACAGGTGATCTTCTCTCCCCCCTGGA
CGACAATAAGTTCATCTGCAAGGACAACTATCTGCTGGGCAAGGCGCCAT
CCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGGCGAGCGAA
GACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCACTCGGATT
GGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACCTCTGGGCA
CATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAAATACCCAT
GACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGACGTGGCGA
TTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATCGAAGCGAC
GCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTGCTCAAGACG
GCCTTCAATCAGACGCC
MXO01394.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11354-PA | 1518 | Lim1-RA | 388..809 | 396..817 | 2085 | 99.7 | Plus |
CG11354-PA | 1518 | Lim1-RA | 1..374 | 9..382 | 1870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lim1-RA | 3081 | CG11354-RA | 799..1607 | 9..817 | 3925 | 99 | Plus |
Lim1-RB | 2708 | CG11354-RB | 170..513 | 474..817 | 1720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8787610..8787839 | 474..245 | 1030 | 96.5 | Minus |
X | 23542271 | X | 8788734..8788930 | 247..51 | 985 | 100 | Minus |
X | 23542271 | X | 8768751..8768943 | 666..474 | 965 | 100 | Minus |
X | 23542271 | X | 8768123..8768278 | 817..662 | 780 | 100 | Minus |
X | 23542271 | X | 8804962..8805006 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 240..325 | 494..582 | 122 | 62.9 | Plus |
TART-A | 13424 | TART-A 13424bp | 11418..11503 | 494..582 | 122 | 62.9 | Plus |
MXO01394.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:16 Download gff for
MXO01394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11354-PA | 1..809 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:51 Download gff for
MXO01394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 793..1607 | 1..817 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:00 Download gff for
MXO01394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 793..1607 | 1..817 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:00 Download gff for
MXO01394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8787610..8787836 | 248..474 | 96 | <- | Minus |
X | 8788734..8788929 | 52..247 | 100 | <- | Minus |
X | 8804964..8805012 | 1..51 | 92 | | Minus |
X | 8768123..8768274 | 666..817 | 100 | <- | Minus |
X | 8768752..8768942 | 475..665 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:51 Download gff for
MXO01394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8662156..8662307 | 666..817 | 100 | <- | Minus |
arm_X | 8662785..8662975 | 475..665 | 100 | <- | Minus |
arm_X | 8681643..8681869 | 248..474 | 96 | <- | Minus |
arm_X | 8682767..8682962 | 52..247 | 100 | <- | Minus |
arm_X | 8698997..8699045 | 1..51 | 92 | | Minus |
MXO01394.3prime Sequence
725 bp (632 high quality bases) assembled on 2007-03-15
> MXO01394.3prime
ATGGTCTAGAAAGCTTGCCCAAACGAGCCCTTCATTTTGCATATTCTGCG
GTTCGCTGAAATTCGCCGAGCTCATGAACTCCGGCGAATTGGTGCGGGGG
CCATTTTGTTGCTGCTGCTGCTGCGTCTGATTCGCCGCTTGTTGCGCATT
CTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTGCG
CCGCCTGTTGCTGCGCCGCTGCCGCTGCGGCGGCCATCAAGTGCTCGGCG
CTCGGCGGCGGCGGCGGTGGCGGCGGTCCGACGGCCGACTGCAGTTGCAT
TGGCGGACCGCCCGCCTGCCCAAGGAACGTCGCCTCCGGCGTCAGTCCGA
ACTCGTTCACCATCGGAATGGGTCCGCTGTGGTCCACGGGGCCACCTGGC
GCATTGAAGGGCATCGGTCCGCCGGGATGTCCGGGAAAGTAGGGTCCGTC
GTGCGGGTGAAAGGGTCCGCCGTAGCCGAACTCGAACTTGGCGTCCGCCG
CGAAGTAGGGAAAGCCGGGTCCGTCGTCCAGTCCGCCGGGCGAGAGGTTC
ATGGGGAAGCCCCTCATTTTCCGGGCGCCACCGAAAAAGGGCGGGCGGCC
CATGCTGGTGATTTGTTTCATGCGTCGCTCCTTCGACCGTTTATTCTGGA
ACCACACCTGTATGACTCGCATGGGCAGCCCGGTCTCCTTGGCCAGTTGC
TCCCGGATGTGGCGTGTCGGCTTCG
MXO01394.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11354-PA | 1518 | Lim1-RA | 809..1515 | 725..19 | 3485 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lim1-RB | 2708 | CG11354-RB | 513..1219 | 725..19 | 3505 | 99.7 | Minus |
Lim1-RA | 3081 | CG11354-RA | 1607..2313 | 725..19 | 3505 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8758028..8758406 | 19..397 | 1880 | 99.7 | Plus |
X | 23542271 | X | 8758692..8758959 | 393..660 | 1340 | 100 | Plus |
X | 23542271 | X | 8768053..8768123 | 655..725 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:03:21 has no hits.
MXO01394.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:15 Download gff for
MXO01394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11354-PA | 809..1518 | 15..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:04 Download gff for
MXO01394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 1607..2316 | 15..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:28 Download gff for
MXO01394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 1607..2316 | 15..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:28 Download gff for
MXO01394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8758025..8758404 | 15..395 | 99 | <- | Plus |
X | 8758695..8758956 | 396..657 | 100 | <- | Plus |
X | 8768056..8768123 | 658..725 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:04 Download gff for
MXO01394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8652058..8652437 | 15..395 | 99 | <- | Plus |
arm_X | 8652728..8652989 | 396..657 | 100 | <- | Plus |
arm_X | 8662089..8662156 | 658..725 | 98 | | Plus |