Clone MXO01394 Report

Search the DGRC for MXO01394

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:94
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptLim1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01394.5prime Sequence

817 bp (710 high quality bases) assembled on 2007-03-15

> MXO01394.5prime
CAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGCACAATATC
GGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCCGGATGCAA
CAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACGCGCCTGGC
ACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCACCGACAAA
TGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTCTTCAGACG
TTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCCATCGGATC
TAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCTTCACCTGC
TGCATCTGCCGCAAGCAATTGAGCACAGGTGATCTTCTCTCCCCCCTGGA
CGACAATAAGTTCATCTGCAAGGACAACTATCTGCTGGGCAAGGCGCCAT
CCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGGCGAGCGAA
GACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCACTCGGATT
GGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACCTCTGGGCA
CATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAAATACCCAT
GACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGACGTGGCGA
TTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATCGAAGCGAC
GCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTGCTCAAGACG
GCCTTCAATCAGACGCC

MXO01394.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11354-PA 1518 Lim1-RA 388..809 396..817 2085 99.7 Plus
CG11354-PA 1518 Lim1-RA 1..374 9..382 1870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RA 3081 CG11354-RA 799..1607 9..817 3925 99 Plus
Lim1-RB 2708 CG11354-RB 170..513 474..817 1720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8787610..8787839 474..245 1030 96.5 Minus
X 23542271 X 8788734..8788930 247..51 985 100 Minus
X 23542271 X 8768751..8768943 666..474 965 100 Minus
X 23542271 X 8768123..8768278 817..662 780 100 Minus
X 23542271 X 8804962..8805006 53..9 225 100 Minus
Blast to na_te.dros performed 2014-11-28 22:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 240..325 494..582 122 62.9 Plus
TART-A 13424 TART-A 13424bp 11418..11503 494..582 122 62.9 Plus

MXO01394.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:16 Download gff for MXO01394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11354-PA 1..809 9..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:51 Download gff for MXO01394.5prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 793..1607 1..817 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:00 Download gff for MXO01394.5prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 793..1607 1..817 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:00 Download gff for MXO01394.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8787610..8787836 248..474 96 <- Minus
X 8788734..8788929 52..247 100 <- Minus
X 8804964..8805012 1..51 92   Minus
X 8768123..8768274 666..817 100 <- Minus
X 8768752..8768942 475..665 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:51 Download gff for MXO01394.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8662156..8662307 666..817 100 <- Minus
arm_X 8662785..8662975 475..665 100 <- Minus
arm_X 8681643..8681869 248..474 96 <- Minus
arm_X 8682767..8682962 52..247 100 <- Minus
arm_X 8698997..8699045 1..51 92   Minus

MXO01394.3prime Sequence

725 bp (632 high quality bases) assembled on 2007-03-15

> MXO01394.3prime
ATGGTCTAGAAAGCTTGCCCAAACGAGCCCTTCATTTTGCATATTCTGCG
GTTCGCTGAAATTCGCCGAGCTCATGAACTCCGGCGAATTGGTGCGGGGG
CCATTTTGTTGCTGCTGCTGCTGCGTCTGATTCGCCGCTTGTTGCGCATT
CTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTGCG
CCGCCTGTTGCTGCGCCGCTGCCGCTGCGGCGGCCATCAAGTGCTCGGCG
CTCGGCGGCGGCGGCGGTGGCGGCGGTCCGACGGCCGACTGCAGTTGCAT
TGGCGGACCGCCCGCCTGCCCAAGGAACGTCGCCTCCGGCGTCAGTCCGA
ACTCGTTCACCATCGGAATGGGTCCGCTGTGGTCCACGGGGCCACCTGGC
GCATTGAAGGGCATCGGTCCGCCGGGATGTCCGGGAAAGTAGGGTCCGTC
GTGCGGGTGAAAGGGTCCGCCGTAGCCGAACTCGAACTTGGCGTCCGCCG
CGAAGTAGGGAAAGCCGGGTCCGTCGTCCAGTCCGCCGGGCGAGAGGTTC
ATGGGGAAGCCCCTCATTTTCCGGGCGCCACCGAAAAAGGGCGGGCGGCC
CATGCTGGTGATTTGTTTCATGCGTCGCTCCTTCGACCGTTTATTCTGGA
ACCACACCTGTATGACTCGCATGGGCAGCCCGGTCTCCTTGGCCAGTTGC
TCCCGGATGTGGCGTGTCGGCTTCG

MXO01394.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11354-PA 1518 Lim1-RA 809..1515 725..19 3485 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RB 2708 CG11354-RB 513..1219 725..19 3505 99.7 Minus
Lim1-RA 3081 CG11354-RA 1607..2313 725..19 3505 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8758028..8758406 19..397 1880 99.7 Plus
X 23542271 X 8758692..8758959 393..660 1340 100 Plus
X 23542271 X 8768053..8768123 655..725 340 98.6 Plus
Blast to na_te.dros performed on 2014-11-28 22:03:21 has no hits.

MXO01394.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:15 Download gff for MXO01394.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11354-PA 809..1518 15..725 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:04 Download gff for MXO01394.3prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 1607..2316 15..725 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:28 Download gff for MXO01394.3prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 1607..2316 15..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:28 Download gff for MXO01394.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8758025..8758404 15..395 99 <- Plus
X 8758695..8758956 396..657 100 <- Plus
X 8768056..8768123 658..725 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:04 Download gff for MXO01394.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8652058..8652437 15..395 99 <- Plus
arm_X 8652728..8652989 396..657 100 <- Plus
arm_X 8662089..8662156 658..725 98   Plus