Clone MXO01395 Report

Search the DGRC for MXO01395

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:95
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG3909-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01395.3prime Sequence

771 bp (733 high quality bases) assembled on 2007-03-15

> MXO01395.3prime
ATGGTCTAGAAAGCTTGCAACAATGGCATTGGGCGGACAGTAGTATATGT
TCAGGGACTTGTCCTCAGAAGCAGAGGCCACCTTGTCGTTTCCGGGGCTA
TATCGGACGCCCCACACCTGATCTGTGTGCTCGGCGAACGTGTGCAGGCA
CTTGCGTTCCGAGGTGTCCCATATTTTCACGCTGTTATCACTGGAGGAGC
TGGCAAAGTGTTTGCCGTCCTCGGAGAATGCCACGCACAGCACCCAAGAT
GCGTGCCCAGATAGGGTGCCCACAACGTCGGAGTGGGTTACATCATAAAG
CTTCATGTGACCATCATCTGAGGCAGTGAGCAGCAGCTGCGAGTTCGGAG
AAAAGCAAAGGCTACGCACTGGCATCGCGTGTCCTTCCAATGTTTGCACT
ACCTTGCCCGCGGCCACATCGAAAATGGTAATGATACCATCGATGGCTCC
ACTGGCAATGTACTTGCCATCGGGACTGTAGGCAATGCTAAGCGTGTATT
TCCCATTTTGGGCATCCAATGTCTGCTCTGCCTTTCCGGTTTCCACACTG
TACATGGAGATTTTGCCGTCGTTCAGTCCGGATATCACATATTTGTTGCA
GGGTGAAAATTGCACCGTCCAGAGATCAACAGGCCCAAAGCTAAGTAGGT
GTTTCTTGTCGCCCGAACGGGCATCCCACAAACACATGGTGGAGTCCAGA
GAACTACTGGCAATGGTCTGTCCATCGGAACTGACGGCCACAGAAACAAC
TCCCAGGGCATGTCCTTTTAG

MXO01395.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-PA 996 CG3909-RA 241..993 771..19 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 318..1070 771..19 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10044304..10044574 289..19 1355 100 Minus
3R 32079331 3R 10043766..10044004 716..478 1195 100 Minus
3R 32079331 3R 10044058..10044249 481..290 945 99.5 Minus
3R 32079331 3R 10043640..10043694 771..717 275 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:06:35 has no hits.

MXO01395.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:16 Download gff for MXO01395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 241..996 16..771 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:53 Download gff for MXO01395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 318..1070 19..771 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:36 Download gff for MXO01395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 318..1070 19..771 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:36 Download gff for MXO01395.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10044304..10044574 19..289 100   Minus
3R 10043640..10043694 717..771 100 -> Minus
3R 10043766..10044004 478..716 100 -> Minus
3R 10044062..10044249 290..477 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:53 Download gff for MXO01395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869362..5869416 717..771 100 -> Minus
arm_3R 5869488..5869726 478..716 100 -> Minus
arm_3R 5869784..5869971 290..477 100 -> Minus
arm_3R 5870026..5870296 19..289 100   Minus

MXO01395.5prime Sequence

602 bp (583 high quality bases) assembled on 2007-03-15

> MXO01395.5prime
CAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGCACGACAGT
CAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCAGATCCGGA
TGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGATAAGAAGG
AGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATGACTTGGTA
AAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGCCACAAACT
AAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTCCGATGGAC
AGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGTGGGATGCC
CGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTTGATCTCTG
GACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGGACTGAACG
ACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAGAGCAGACA
TTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTACAGTCCCGA
TGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTACCATTTTCG
AT

MXO01395.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-PA 996 CG3909-RA 1..594 9..602 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 78..671 9..602 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10043402..10043694 11..303 1465 100 Plus
3R 32079331 3R 10043766..10044004 304..542 1195 100 Plus
3R 32079331 3R 10044058..10044121 539..602 305 98.4 Plus
Blast to na_te.dros performed on 2014-11-28 21:02:08 has no hits.

MXO01395.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:16 Download gff for MXO01395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 1..594 9..602 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:28 Download gff for MXO01395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 78..671 9..602 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:00 Download gff for MXO01395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 78..671 9..602 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:00 Download gff for MXO01395.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10043397..10043694 5..303 98 -> Plus
3R 10043766..10044004 304..542 100 -> Plus
3R 10044062..10044121 543..602 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:28 Download gff for MXO01395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869119..5869416 5..303 98 -> Plus
arm_3R 5869488..5869726 304..542 100 -> Plus
arm_3R 5869784..5869843 543..602 100   Plus