MXO01395.3prime Sequence
771 bp (733 high quality bases) assembled on 2007-03-15
> MXO01395.3prime
ATGGTCTAGAAAGCTTGCAACAATGGCATTGGGCGGACAGTAGTATATGT
TCAGGGACTTGTCCTCAGAAGCAGAGGCCACCTTGTCGTTTCCGGGGCTA
TATCGGACGCCCCACACCTGATCTGTGTGCTCGGCGAACGTGTGCAGGCA
CTTGCGTTCCGAGGTGTCCCATATTTTCACGCTGTTATCACTGGAGGAGC
TGGCAAAGTGTTTGCCGTCCTCGGAGAATGCCACGCACAGCACCCAAGAT
GCGTGCCCAGATAGGGTGCCCACAACGTCGGAGTGGGTTACATCATAAAG
CTTCATGTGACCATCATCTGAGGCAGTGAGCAGCAGCTGCGAGTTCGGAG
AAAAGCAAAGGCTACGCACTGGCATCGCGTGTCCTTCCAATGTTTGCACT
ACCTTGCCCGCGGCCACATCGAAAATGGTAATGATACCATCGATGGCTCC
ACTGGCAATGTACTTGCCATCGGGACTGTAGGCAATGCTAAGCGTGTATT
TCCCATTTTGGGCATCCAATGTCTGCTCTGCCTTTCCGGTTTCCACACTG
TACATGGAGATTTTGCCGTCGTTCAGTCCGGATATCACATATTTGTTGCA
GGGTGAAAATTGCACCGTCCAGAGATCAACAGGCCCAAAGCTAAGTAGGT
GTTTCTTGTCGCCCGAACGGGCATCCCACAAACACATGGTGGAGTCCAGA
GAACTACTGGCAATGGTCTGTCCATCGGAACTGACGGCCACAGAAACAAC
TCCCAGGGCATGTCCTTTTAG
MXO01395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-PA | 996 | CG3909-RA | 241..993 | 771..19 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 1102 | CG3909-RA | 318..1070 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10044304..10044574 | 289..19 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 10043766..10044004 | 716..478 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 10044058..10044249 | 481..290 | 945 | 99.5 | Minus |
3R | 32079331 | 3R | 10043640..10043694 | 771..717 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:35 has no hits.
MXO01395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:16 Download gff for
MXO01395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 241..996 | 16..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:53 Download gff for
MXO01395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 318..1070 | 19..771 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:36 Download gff for
MXO01395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 318..1070 | 19..771 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:36 Download gff for
MXO01395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10044304..10044574 | 19..289 | 100 | | Minus |
3R | 10043640..10043694 | 717..771 | 100 | -> | Minus |
3R | 10043766..10044004 | 478..716 | 100 | -> | Minus |
3R | 10044062..10044249 | 290..477 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:53 Download gff for
MXO01395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5869362..5869416 | 717..771 | 100 | -> | Minus |
arm_3R | 5869488..5869726 | 478..716 | 100 | -> | Minus |
arm_3R | 5869784..5869971 | 290..477 | 100 | -> | Minus |
arm_3R | 5870026..5870296 | 19..289 | 100 | | Minus |
MXO01395.5prime Sequence
602 bp (583 high quality bases) assembled on 2007-03-15
> MXO01395.5prime
CAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGCACGACAGT
CAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCAGATCCGGA
TGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGATAAGAAGG
AGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATGACTTGGTA
AAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGCCACAAACT
AAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTCCGATGGAC
AGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGTGGGATGCC
CGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTTGATCTCTG
GACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGGACTGAACG
ACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAGAGCAGACA
TTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTACAGTCCCGA
TGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTACCATTTTCG
AT
MXO01395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-PA | 996 | CG3909-RA | 1..594 | 9..602 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 1102 | CG3909-RA | 78..671 | 9..602 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10043402..10043694 | 11..303 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 10043766..10044004 | 304..542 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 10044058..10044121 | 539..602 | 305 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:02:08 has no hits.
MXO01395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:16 Download gff for
MXO01395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 1..594 | 9..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:28 Download gff for
MXO01395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 78..671 | 9..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:00 Download gff for
MXO01395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 78..671 | 9..602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:00 Download gff for
MXO01395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10043397..10043694 | 5..303 | 98 | -> | Plus |
3R | 10043766..10044004 | 304..542 | 100 | -> | Plus |
3R | 10044062..10044121 | 543..602 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:28 Download gff for
MXO01395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5869119..5869416 | 5..303 | 98 | -> | Plus |
arm_3R | 5869488..5869726 | 304..542 | 100 | -> | Plus |
arm_3R | 5869784..5869843 | 543..602 | 100 | | Plus |