MXO01396.3prime Sequence
821 bp (760 high quality bases) assembled on 2007-03-15
> MXO01396.3prime
ATGGTCTAGAAAGCTTGCCTTTTGCGAGAGAATTTCTATTTTTGGAGGCG
GCGTAATAGAGGAAGTGCGCGAAGTATTTGATGCATCTATACTTGCTCGT
CGTGCAGCTGCGGCAATATACGACCCGTAGTACCTACTAAGCATGTGTTG
ATCAACCTGGTTCAGTTCAAGATACGCATCTGAAATGGGAACTGACAGGG
TTGATGTTTTCGCAGTAGCCATTGACGATATGAGTGCAGTTTGGGGCGCG
ACAATGCACTCTTGTATAGGACATTCCTCAAGTGAGCTTGACTCCTCGTG
TTGGCTACTACTGCTACCCAAGGACCTGGCTGCGGAGCTGGCAATTGAAA
AGTTGTGCTGTTCAAGGTCTTCTGGATCGTGGTCGGGGTCATGATCGGGA
TCGGCATCAAATGAAGATAGCCTGCCATCGATTAGGTACGAGTTATTGTC
CTCAATGGAAAATATTTGCTTCAAAGTGCCCCTTGTTTTTTTCCTGTCTT
CCCCATCCGTATAAGAATCAGTATCAGGAATAATGCTATCGTCTACCACG
TCGACATTAACTTCTACATCAATATCAGCGTCTATGTCTGCATCTTGCAC
AGGTTTTTCTAATCCCAACACAACTTCGCGGTGTATTGTTTGCTTGGTAA
TGACAGTATGATGAGTTTGAGTTGTTGTCCTCGCCGAAGTGGTTGGCGTA
ACTGACGACTCCTGGTCTTCAGAGACAATATCAACGATTTGGACATCGGG
TGCCAGTAGCGAAACCACGTCAAACTGGCGCTTCCGCGTCTGCGAAACAT
ATTCGCGATTGTTGTTGTCGT
MXO01396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11152-PA | 1800 | CG11152-RA | 1019..1797 | 797..19 | 3870 | 99.8 | Minus |
| CG11152-PA | 1800 | CG11152-RA | 994..1020 | 821..795 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 2324 | CG11152-RA | 1295..2098 | 821..19 | 3980 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 837212..838015 | 19..821 | 3955 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:35 has no hits.
MXO01396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:17 Download gff for
MXO01396.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 994..1800 | 15..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:09 Download gff for
MXO01396.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 1295..2101 | 15..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:47 Download gff for
MXO01396.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 1295..2101 | 15..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:47 Download gff for
MXO01396.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 837208..838015 | 15..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:09 Download gff for
MXO01396.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 857834..858641 | 15..821 | 99 | | Plus |
MXO01396.5prime Sequence
643 bp (621 high quality bases) assembled on 2007-03-15
> MXO01396.5prime
CAGTCGACATGGCGCACTCTGACATACTGTGCTTTACAGACGACCACTGC
TGACCAGGATCAGGGAACGTCTTCAAGGGACAGCAATGTTCCCAAGCCGT
CTTTGCCCAACATCTACCCACTTGGAACGACAAGAACTTCACAAGCTCAA
TCAACGACGATGACTTTGGAACAATACCGCCTCCAGCTGTATAACTATGC
ACTCAATATTGAACGACTACGCTGCCCCCAATATGGTGGGACGGGTGGCA
GTGGAGCTAGTGCTCCTTGGTTGCATTTAAGCCCCTACGGACACCATGGC
TCAGGCAGTCTTCCATCAGTTAATCGAATGGCCGCTCTTTCAACAATTTC
CCTCTTCCCACAAACGCAACGCATTTTTCAACCTGAGGAGCCTCCCCCGC
AACACAGCTATATTGGTTTGATTGCCATGGCCATATTGAGCTCAACTGAT
ATGAAGTTGGTTCTCTCAGACATTTATCAATATATTTTGGATAATTATCC
TTACTTTAGAAGTCGGGGGCCGGGATGGAGAAACTCCATCAGGCACAATC
TCTCTCTAAATGATTGCTTTATCAAATCTGGACGAAGTGCAAATGGCAAA
GGGCACTACTGGGCAATACATCCAGCCAACATGGAGGATTTTC
MXO01396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11152-PA | 1800 | CG11152-RA | 19..384 | 28..393 | 1830 | 100 | Plus |
| CG11152-PA | 1800 | CG11152-RA | 388..634 | 397..643 | 1235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 2324 | CG11152-RA | 302..935 | 9..643 | 3105 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 838375..839008 | 643..9 | 3080 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:53 has no hits.
MXO01396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:17 Download gff for
MXO01396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 1..634 | 9..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:28 Download gff for
MXO01396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 293..935 | 1..643 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:33 Download gff for
MXO01396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 293..935 | 1..643 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:33 Download gff for
MXO01396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 838375..839013 | 1..643 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:28 Download gff for
MXO01396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 859001..859639 | 1..643 | 98 | | Minus |
