MXO02001.3prime Sequence
775 bp (767 high quality bases) assembled on 2007-01-18
> MXO02001.3prime
ATGGTCTAGAAAGCTTGCATTTCAAGACCACGTCGTGATCAAATTGCAAG
TGGTGTTCGAGCTCCTTCTTGTTCTCGAAGTTGGTATTGCAAATGAGACA
GAAGCCGCTGTTCTCATCGTTGTCGGACATGATGACGGTGACGGCCGCCT
CCGATTCGTCGACGTCCACATGCAGCTCCTCCACCACCTGCTGCTCGTCG
GCGGGCGCCTCCTCGCGAACCCCGTAAACGACGTCGCCCTCGTGGGTCTT
CATGTGCATCTTGAGGGTGTAGCGCTCGGTGAAGGACTTGGGGCAGACGG
AGCAGTAGTGTCTTGGGCGGTTCTCCTTGTGAATGAGCGTGTGATGGTTG
AAGGTCTTGCGCGACTTGAACGACACATTGCAGATGCTGCATATGATGGG
GTTCTCCTCAGCCTCGTGGCGCAGCCGGTGGTTGTAGAGTAGGTTGTCCT
GGGAGAACCTCAGGCCGCACTTCTCGCACTGGTACTTCTTCTTGTCCCAG
TGCATGCGCATGTGGCGCAGGGTGTTCACCGGGCGCGAGAAGCTCTTGGG
GCAGTAGCGGCATTGCTTTTCCGTCTTGCCCTCGTGCAGATTCATGTGCA
GCTCCAAGTACTCCTCGTCGCGCCGGATCACCCCGCAGATGGGGCAGATG
TGGTTGGGCTGCTTGGAGTGCTCCTCGCTGATGTGCTTCTGCAGTTGATA
CCAGGAGTTGTACACCTTGCCGCAGGTAGTGCACTCCTGCTTGACGCGCT
TCTTCGTCGGCCTGTCCTCGCCATC
MXO02001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17958-PA | 1302 | Sry-delta-RA | 544..1300 | 775..19 | 3785 | 100 | Minus |
CG7938-PA | 1071 | Sry-beta-RA | 749..789 | 504..464 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-delta-RA | 1546 | CG17958-RA | 682..1438 | 775..19 | 3785 | 100 | Minus |
Sry-beta-RB | 3300 | CG7938-RB | 746..883 | 601..464 | 300 | 81.2 | Minus |
Sry-beta-RA | 1260 | CG7938-RA | 746..883 | 601..464 | 300 | 81.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30044022..30044778 | 775..19 | 3785 | 100 | Minus |
3R | 32079331 | 3R | 30040517..30040654 | 601..464 | 300 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:01 has no hits.
MXO02001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:17 Download gff for
MXO02001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17958-PA | 544..1302 | 15..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:17 Download gff for
MXO02001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 682..1443 | 12..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:27 Download gff for
MXO02001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 682..1443 | 12..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:27 Download gff for
MXO02001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30044022..30044783 | 12..775 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:17 Download gff for
MXO02001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25869744..25870505 | 12..775 | 99 | | Minus |
MXO02001.5prime Sequence
853 bp (754 high quality bases) assembled on 2007-04-03
> MXO02001.5prime
CAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATCTGAGCGAC
ACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCCAAGGTGCC
GTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGCCAACTGCA
TCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCCCGCGCTGC
TTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTGATGACCAC
CCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTCCGAGTTCG
AGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGGAGATACCC
CAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCCCTGTTCGT
GGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAAGAGAGAGT
TCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACGAGTTCATC
TGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGCAAGTCCTC
CGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGAGTGCACTA
CCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGCACATCAGC
GAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGCGGGGTGAT
CCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCACGAGGGCA
AGACGGAAAAGCAATGCCGCTACTGCCCCAAGAGCTTCTCGCGCCCGGTG
AACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAGTACCAGTG
CGA
MXO02001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17958-PA | 1302 | Sry-delta-RA | 1..845 | 9..853 | 4225 | 100 | Plus |
CG7938-PA | 1071 | Sry-beta-RA | 749..779 | 823..853 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-delta-RA | 1546 | CG17958-RA | 139..983 | 9..853 | 4225 | 100 | Plus |
Sry-beta-RB | 3300 | CG7938-RB | 746..873 | 726..853 | 265 | 80.5 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 746..873 | 726..853 | 265 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30043479..30044323 | 9..853 | 4225 | 100 | Plus |
3R | 32079331 | 3R | 30040517..30040644 | 726..853 | 265 | 80.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:19 has no hits.
MXO02001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:18 Download gff for
MXO02001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17958-PA | 1..844 | 9..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:59 Download gff for
MXO02001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 132..982 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:51 Download gff for
MXO02001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 132..982 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:51 Download gff for
MXO02001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30043472..30044322 | 1..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:59 Download gff for
MXO02001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25869194..25870044 | 1..852 | 99 | | Plus |