Clone MXO02001 Report

Search the DGRC for MXO02001

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:1
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptKdelR-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02001.3prime Sequence

775 bp (767 high quality bases) assembled on 2007-01-18

> MXO02001.3prime
ATGGTCTAGAAAGCTTGCATTTCAAGACCACGTCGTGATCAAATTGCAAG
TGGTGTTCGAGCTCCTTCTTGTTCTCGAAGTTGGTATTGCAAATGAGACA
GAAGCCGCTGTTCTCATCGTTGTCGGACATGATGACGGTGACGGCCGCCT
CCGATTCGTCGACGTCCACATGCAGCTCCTCCACCACCTGCTGCTCGTCG
GCGGGCGCCTCCTCGCGAACCCCGTAAACGACGTCGCCCTCGTGGGTCTT
CATGTGCATCTTGAGGGTGTAGCGCTCGGTGAAGGACTTGGGGCAGACGG
AGCAGTAGTGTCTTGGGCGGTTCTCCTTGTGAATGAGCGTGTGATGGTTG
AAGGTCTTGCGCGACTTGAACGACACATTGCAGATGCTGCATATGATGGG
GTTCTCCTCAGCCTCGTGGCGCAGCCGGTGGTTGTAGAGTAGGTTGTCCT
GGGAGAACCTCAGGCCGCACTTCTCGCACTGGTACTTCTTCTTGTCCCAG
TGCATGCGCATGTGGCGCAGGGTGTTCACCGGGCGCGAGAAGCTCTTGGG
GCAGTAGCGGCATTGCTTTTCCGTCTTGCCCTCGTGCAGATTCATGTGCA
GCTCCAAGTACTCCTCGTCGCGCCGGATCACCCCGCAGATGGGGCAGATG
TGGTTGGGCTGCTTGGAGTGCTCCTCGCTGATGTGCTTCTGCAGTTGATA
CCAGGAGTTGTACACCTTGCCGCAGGTAGTGCACTCCTGCTTGACGCGCT
TCTTCGTCGGCCTGTCCTCGCCATC

MXO02001.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17958-PA 1302 Sry-delta-RA 544..1300 775..19 3785 100 Minus
CG7938-PA 1071 Sry-beta-RA 749..789 504..464 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1546 CG17958-RA 682..1438 775..19 3785 100 Minus
Sry-beta-RB 3300 CG7938-RB 746..883 601..464 300 81.2 Minus
Sry-beta-RA 1260 CG7938-RA 746..883 601..464 300 81.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30044022..30044778 775..19 3785 100 Minus
3R 32079331 3R 30040517..30040654 601..464 300 81.2 Minus
Blast to na_te.dros performed on 2014-11-28 22:27:01 has no hits.

MXO02001.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:17 Download gff for MXO02001.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 544..1302 15..775 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:17 Download gff for MXO02001.3prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 682..1443 12..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:27 Download gff for MXO02001.3prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 682..1443 12..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:27 Download gff for MXO02001.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30044022..30044783 12..775 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:17 Download gff for MXO02001.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25869744..25870505 12..775 99   Minus

MXO02001.5prime Sequence

853 bp (754 high quality bases) assembled on 2007-04-03

> MXO02001.5prime
CAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATCTGAGCGAC
ACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCCAAGGTGCC
GTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGCCAACTGCA
TCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCCCGCGCTGC
TTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTGATGACCAC
CCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTCCGAGTTCG
AGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGGAGATACCC
CAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCCCTGTTCGT
GGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAAGAGAGAGT
TCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACGAGTTCATC
TGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGCAAGTCCTC
CGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGAGTGCACTA
CCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGCACATCAGC
GAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGCGGGGTGAT
CCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCACGAGGGCA
AGACGGAAAAGCAATGCCGCTACTGCCCCAAGAGCTTCTCGCGCCCGGTG
AACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAGTACCAGTG
CGA

MXO02001.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17958-PA 1302 Sry-delta-RA 1..845 9..853 4225 100 Plus
CG7938-PA 1071 Sry-beta-RA 749..779 823..853 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1546 CG17958-RA 139..983 9..853 4225 100 Plus
Sry-beta-RB 3300 CG7938-RB 746..873 726..853 265 80.5 Plus
Sry-beta-RA 1260 CG7938-RA 746..873 726..853 265 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30043479..30044323 9..853 4225 100 Plus
3R 32079331 3R 30040517..30040644 726..853 265 80.5 Plus
Blast to na_te.dros performed on 2014-11-28 23:17:19 has no hits.

MXO02001.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:18 Download gff for MXO02001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 1..844 9..852 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:59 Download gff for MXO02001.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 132..982 1..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:51 Download gff for MXO02001.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 132..982 1..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:51 Download gff for MXO02001.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30043472..30044322 1..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:59 Download gff for MXO02001.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25869194..25870044 1..852 99   Plus