MXO02003.3prime Sequence
534 bp (516 high quality bases) assembled on 2007-01-18
> MXO02003.3prime
ATGGTCTAGAAAGCTTGCCGACAGCTTCTTAGCCTTCTGGTACAGTGTGT
CCACCACCTTACCCATACTTTGTATGGTTTCCAGCACGCGTTCATAGGTC
TTGTCCACGGGCGTCTCTTCGAAAACAATCAGTACTCCCTCACCCTGATC
CAGAATGCCGCTGAACTTTTTGTCCAGGATCATTTGGGACAGCTTCTTTT
CCACCTGCGGCATGGGCAGCTGAATGCTCTCGGCAACATGGGCGACCTGC
ACACGAGAGTAGGGTTCAATGATGCGGCACAAGTTTTGCTCCAACATGGT
GTCGTATAACGTGCCCAAATGCGCCTGCACAATCACATCCTCGGCGAGCT
CCTTTTTGTATTCCTTGAGGGCAGCCTGGAAGTCGGCCAGGGAACGTTTG
TGTGAAGCCTCAGCCACTGATTTCATAGCATCTATATCGCGGCCCGAATA
GGTAATAGCCAGCTTTCCACTGACGAGCTGGTTGACATCATCGGACTGTC
CCAACATGATTTTGCACACACTGATTAACAGCAG
MXO02003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10149-PA | 1320 | Rpn6-RA | 818..1317 | 518..19 | 2500 | 100 | Minus |
| CG10149-PB | 1269 | Rpn6-RB | 767..1266 | 518..19 | 2500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn6-RC | 1662 | CG10149-RC | 840..1339 | 518..19 | 2500 | 100 | Minus |
| Rpn6-RB | 1827 | CG10149-RB | 1005..1504 | 518..19 | 2500 | 100 | Minus |
| Rpn6-RA | 1612 | CG10149-RA | 892..1391 | 518..19 | 2500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14750489..14750720 | 19..250 | 1160 | 100 | Plus |
| 2R | 25286936 | 2R | 14750781..14750996 | 245..460 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 14751144..14751203 | 459..518 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:04 has no hits.
MXO02003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:19 Download gff for
MXO02003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10149-PB | 755..1269 | 15..526 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:01 Download gff for
MXO02003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn6-RA | 880..1396 | 13..526 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:32 Download gff for
MXO02003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn6-RA | 880..1396 | 13..526 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:32 Download gff for
MXO02003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14751145..14751215 | 460..526 | 94 | | Plus |
| 2R | 14750484..14750716 | 13..246 | 99 | <- | Plus |
| 2R | 14750783..14750995 | 247..459 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:01 Download gff for
MXO02003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10638650..10638720 | 460..526 | 94 | | Plus |
| arm_2R | 10637989..10638221 | 13..246 | 99 | <- | Plus |
| arm_2R | 10638288..10638500 | 247..459 | 100 | <- | Plus |
MXO02003.5prime Sequence
693 bp (692 high quality bases) assembled on 2007-04-03
> MXO02003.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTC
MXO02003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:07:33 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:01:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 22:01:13 has no hits.
Blast to na_te.dros performed on 2014-11-28 22:01:13 has no hits.
MXO02003.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:47:34 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:47:34 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:48:15 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:48:15 has no hits.
