Clone MXO02004 Report

Search the DGRC for MXO02004

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:4
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTsp96F-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02004.3prime Sequence

828 bp (757 high quality bases) assembled on 2007-01-18

> MXO02004.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGTAGTGCTGATTCCTCACCGCGCAGC
AGAGGCTCAGGGCGAAAGTCAGGGACAGCAGCTCCAGCAGAATGACAGCG
GCGGTGACGGCGAAAATGGTGACCCAGTTCTCGTAGATGATTTCAATCAG
CTTGTCCACGCAGCCCTGCTGATAAATGGCGTTGTTCAATGGGCCACCAA
ATTTCAGGCGTCTGGACAGCTCACACTCATTATCCTTTAGATTATCCTTG
CAGCAGGACTCGGGTATGTTATAGAAGACATTCATGGAAGACACGGCGAT
CTCCACAATATTTGTGCGATCCACATTATTAAACCGACTCGTGGCCCAAT
CTCCAGGTCCATCGGCGCCGCAGCATTTCAAATTCTTTTGCAGCGTATCA
AAGGTGACGGTGCGCGAACTCATCGTGGACTGGCCGTACTCCTCCTGGAC
TGACGACTTGACAGCCGCCCGCACGATGTCATCCAGCTTGTCTTTGTTGT
GGAAGGCCCATGCTCCGGCTGCAATTTGTGCCACCATCACGATGAGTATG
ACACAGAAGAACGAAACCAGCAGACATTGCGACTCACGTCACACTCCGCA
ACAGCCAAAGAATGCGCCCAATGTGATCAGTATGCCGATGGCGAGGAAAA
CATACAGGGCTATGTGATAATGATTGTAGTTCTGTGTCATCGACAGCATA
AATGTGGGATCCGTCAGCATCCAAACGGAGGTCACCACGATGGTCAGTCC
GATGAGCCAGAATAAAATGTTTATAAGGACCATCAGATATTTGACGCACG
AACAGCAGCCGTTGAGACCCATGTCGAC

MXO02004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6120-PA 807 Tsp96F-RA 1..804 822..19 3970 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 3343 CG6120-RC 346..1150 823..19 3995 99.8 Minus
Tsp96F-RB 2709 CG6120-RB 346..1150 823..19 3995 99.8 Minus
Tsp96F-RA 2709 CG6120-RA 346..1150 823..19 3995 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25875658..25875874 165..381 1085 100 Plus
3R 32079331 3R 25876532..25876727 562..757 950 99 Plus
3R 32079331 3R 25875945..25876125 382..562 905 100 Plus
3R 32079331 3R 25875093..25875243 19..169 755 100 Plus
3R 32079331 3R 25881016..25881082 757..823 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:30:09 has no hits.

MXO02004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:19 Download gff for MXO02004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:02 Download gff for MXO02004.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 342..1150 19..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:36 Download gff for MXO02004.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 342..1150 19..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:36 Download gff for MXO02004.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25875093..25875239 19..165 100 <- Plus
3R 25875659..25875874 166..381 100 <- Plus
3R 25875945..25876124 382..561 100 <- Plus
3R 25876532..25876726 562..756 98 <- Plus
3R 25881016..25881086 757..828 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:02 Download gff for MXO02004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21700815..21700961 19..165 100 <- Plus
arm_3R 21701381..21701596 166..381 100 <- Plus
arm_3R 21701667..21701846 382..561 100 <- Plus
arm_3R 21702254..21702448 562..756 98 <- Plus
arm_3R 21706738..21706808 757..828 97   Plus

MXO02004.5prime Sequence

823 bp (696 high quality bases) assembled on 2007-04-02

> MXO02004.5prime
CAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAATATCTGATG
GTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATCGTGGTGAC
CTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGATGACACAGA
ACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCATCGGCATA
CTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGTCGTGAGTC
GCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGTGATGGTGG
CACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACAAGCTGGAT
GACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAGTACGGCCA
GTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCAAAAGAATT
TGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGAGTCGGTTT
AATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCTTCCATGAA
TGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCTAAAGGATA
ATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCATTGAACAAC
GCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATCATCTACGA
GAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCTGCTGGAGC
TGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGAGGAATCAA
CACTACAACGCCGCAAGCTTTCT

MXO02004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6120-PA 807 Tsp96F-RA 1..800 9..808 3975 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 3343 CG6120-RC 346..1150 8..812 3995 99.8 Plus
Tsp96F-RB 2709 CG6120-RB 346..1150 8..812 3995 99.8 Plus
Tsp96F-RA 2709 CG6120-RA 346..1150 8..812 3995 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25875658..25875874 666..450 1085 100 Minus
3R 32079331 3R 25876532..25876727 269..74 980 100 Minus
3R 32079331 3R 25875945..25876125 449..269 905 100 Minus
3R 32079331 3R 25875093..25875243 812..662 725 98.7 Minus
3R 32079331 3R 25881016..25881082 74..8 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:51:46 has no hits.

MXO02004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:20 Download gff for MXO02004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 9..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:29 Download gff for MXO02004.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 340..1150 1..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:21 Download gff for MXO02004.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 340..1150 1..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:21 Download gff for MXO02004.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25875093..25875239 666..812 98 <- Minus
3R 25875659..25875874 450..665 100 <- Minus
3R 25875945..25876124 270..449 100 <- Minus
3R 25876532..25876726 75..269 100 <- Minus
3R 25881016..25881087 1..74 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:29 Download gff for MXO02004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21700815..21700961 666..812 98 <- Minus
arm_3R 21701381..21701596 450..665 100 <- Minus
arm_3R 21701667..21701846 270..449 100 <- Minus
arm_3R 21702254..21702448 75..269 100 <- Minus
arm_3R 21706738..21706809 1..74 95   Minus