Clone Sequence Records
MXO02004.3prime Sequence
828 bp (757 high quality bases) assembled on 2007-01-18
> MXO02004.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGTAGTGCTGATTCCTCACCGCGCAGC
AGAGGCTCAGGGCGAAAGTCAGGGACAGCAGCTCCAGCAGAATGACAGCG
GCGGTGACGGCGAAAATGGTGACCCAGTTCTCGTAGATGATTTCAATCAG
CTTGTCCACGCAGCCCTGCTGATAAATGGCGTTGTTCAATGGGCCACCAA
ATTTCAGGCGTCTGGACAGCTCACACTCATTATCCTTTAGATTATCCTTG
CAGCAGGACTCGGGTATGTTATAGAAGACATTCATGGAAGACACGGCGAT
CTCCACAATATTTGTGCGATCCACATTATTAAACCGACTCGTGGCCCAAT
CTCCAGGTCCATCGGCGCCGCAGCATTTCAAATTCTTTTGCAGCGTATCA
AAGGTGACGGTGCGCGAACTCATCGTGGACTGGCCGTACTCCTCCTGGAC
TGACGACTTGACAGCCGCCCGCACGATGTCATCCAGCTTGTCTTTGTTGT
GGAAGGCCCATGCTCCGGCTGCAATTTGTGCCACCATCACGATGAGTATG
ACACAGAAGAACGAAACCAGCAGACATTGCGACTCACGTCACACTCCGCA
ACAGCCAAAGAATGCGCCCAATGTGATCAGTATGCCGATGGCGAGGAAAA
CATACAGGGCTATGTGATAATGATTGTAGTTCTGTGTCATCGACAGCATA
AATGTGGGATCCGTCAGCATCCAAACGGAGGTCACCACGATGGTCAGTCC
GATGAGCCAGAATAAAATGTTTATAAGGACCATCAGATATTTGACGCACG
AACAGCAGCCGTTGAGACCCATGTCGAC
MXO02004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6120-PA | 807 | Tsp96F-RA | 1..804 | 822..19 | 3970 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 3343 | CG6120-RC | 346..1150 | 823..19 | 3995 | 99.8 | Minus |
Tsp96F-RB | 2709 | CG6120-RB | 346..1150 | 823..19 | 3995 | 99.8 | Minus |
Tsp96F-RA | 2709 | CG6120-RA | 346..1150 | 823..19 | 3995 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25875658..25875874 | 165..381 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 25876532..25876727 | 562..757 | 950 | 99 | Plus |
3R | 32079331 | 3R | 25875945..25876125 | 382..562 | 905 | 100 | Plus |
3R | 32079331 | 3R | 25875093..25875243 | 19..169 | 755 | 100 | Plus |
3R | 32079331 | 3R | 25881016..25881082 | 757..823 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:30:09 has no hits.
MXO02004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:19 Download gff for
MXO02004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:02 Download gff for
MXO02004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 342..1150 | 19..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:36 Download gff for
MXO02004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 342..1150 | 19..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:36 Download gff for
MXO02004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25875093..25875239 | 19..165 | 100 | <- | Plus |
3R | 25875659..25875874 | 166..381 | 100 | <- | Plus |
3R | 25875945..25876124 | 382..561 | 100 | <- | Plus |
3R | 25876532..25876726 | 562..756 | 98 | <- | Plus |
3R | 25881016..25881086 | 757..828 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:02 Download gff for
MXO02004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21700815..21700961 | 19..165 | 100 | <- | Plus |
arm_3R | 21701381..21701596 | 166..381 | 100 | <- | Plus |
arm_3R | 21701667..21701846 | 382..561 | 100 | <- | Plus |
arm_3R | 21702254..21702448 | 562..756 | 98 | <- | Plus |
arm_3R | 21706738..21706808 | 757..828 | 97 | | Plus |
MXO02004.5prime Sequence
823 bp (696 high quality bases) assembled on 2007-04-02
> MXO02004.5prime
CAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAATATCTGATG
GTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATCGTGGTGAC
CTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGATGACACAGA
ACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCATCGGCATA
CTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGTCGTGAGTC
GCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGTGATGGTGG
CACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACAAGCTGGAT
GACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAGTACGGCCA
GTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCAAAAGAATT
TGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGAGTCGGTTT
AATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCTTCCATGAA
TGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCTAAAGGATA
ATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCATTGAACAAC
GCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATCATCTACGA
GAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCTGCTGGAGC
TGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGAGGAATCAA
CACTACAACGCCGCAAGCTTTCT
MXO02004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6120-PA | 807 | Tsp96F-RA | 1..800 | 9..808 | 3975 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 3343 | CG6120-RC | 346..1150 | 8..812 | 3995 | 99.8 | Plus |
Tsp96F-RB | 2709 | CG6120-RB | 346..1150 | 8..812 | 3995 | 99.8 | Plus |
Tsp96F-RA | 2709 | CG6120-RA | 346..1150 | 8..812 | 3995 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25875658..25875874 | 666..450 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 25876532..25876727 | 269..74 | 980 | 100 | Minus |
3R | 32079331 | 3R | 25875945..25876125 | 449..269 | 905 | 100 | Minus |
3R | 32079331 | 3R | 25875093..25875243 | 812..662 | 725 | 98.7 | Minus |
3R | 32079331 | 3R | 25881016..25881082 | 74..8 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:46 has no hits.
MXO02004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:20 Download gff for
MXO02004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:29 Download gff for
MXO02004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 340..1150 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:21 Download gff for
MXO02004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 340..1150 | 1..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:21 Download gff for
MXO02004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25875093..25875239 | 666..812 | 98 | <- | Minus |
3R | 25875659..25875874 | 450..665 | 100 | <- | Minus |
3R | 25875945..25876124 | 270..449 | 100 | <- | Minus |
3R | 25876532..25876726 | 75..269 | 100 | <- | Minus |
3R | 25881016..25881087 | 1..74 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:29 Download gff for
MXO02004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21700815..21700961 | 666..812 | 98 | <- | Minus |
arm_3R | 21701381..21701596 | 450..665 | 100 | <- | Minus |
arm_3R | 21701667..21701846 | 270..449 | 100 | <- | Minus |
arm_3R | 21702254..21702448 | 75..269 | 100 | <- | Minus |
arm_3R | 21706738..21706809 | 1..74 | 95 | | Minus |