MXO02005.3prime Sequence
176 bp (175 high quality bases) assembled on 2007-01-18
> MXO02005.3prime
ATGGTCTAGAAAGCTTGCATCATCGAAGCTAGACGATAGCAAAAAATTAG
CTGCTTGTTCCTCGTTCTTTTCACAAGCGAAGTACGCTTGCAGTACAAGG
GCCTCTGGGAATCCAAGAGCTTTTAGCCGTTCTATTGCGTCCTTATCTTG
GCGATTTAAACGAATGGTTGATACTC
MXO02005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1836-PB | 1032 | Rad23-RB | 872..1029 | 176..19 | 790 | 100 | Minus |
| CG1836-PA | 1245 | Rad23-RA | 1085..1242 | 176..19 | 790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad23-RC | 2009 | CG1836-RC | 1216..1373 | 176..19 | 790 | 100 | Minus |
| Rad23-RA | 1489 | CG1836-RA | 1216..1373 | 176..19 | 790 | 100 | Minus |
| Rad23-RB | 1507 | CG1836-RB | 1234..1391 | 176..19 | 790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 310078..310186 | 127..19 | 545 | 100 | Minus |
| 4 | 1348131 | 4 | 309968..310017 | 176..127 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:59 has no hits.
MXO02005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:20 Download gff for
MXO02005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1836-PA | 1085..1245 | 18..176 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:00 Download gff for
MXO02005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad23-RB | 1234..1391 | 19..176 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:50 Download gff for
MXO02005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad23-RB | 1234..1391 | 19..176 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:50 Download gff for
MXO02005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 309968..310017 | 127..176 | 100 | -> | Minus |
| 4 | 310079..310186 | 19..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:00 Download gff for
MXO02005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 330594..330643 | 127..176 | 100 | -> | Minus |
| arm_4 | 330705..330812 | 19..126 | 100 | | Minus |
MXO02005.5prime Sequence
882 bp (796 high quality bases) assembled on 2007-04-03
> MXO02005.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATCCTA
TAAATGCGGATGACACATCGATTTACATGTTCTATCAAAAAGTCGGCGAA
ACTTCTATTGACAGCTGGAAAAACGCTGGCCG
MXO02005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:07:36 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 20:49:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 20:49:54 has no hits.
Blast to na_te.dros performed on 2014-11-28 20:49:55 has no hits.
MXO02005.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:30:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:30:47 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:41:48 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:41:48 has no hits.
