Clone MXO02007 Report

Search the DGRC for MXO02007

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:7
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptUK114-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02007.3prime Sequence

438 bp (438 high quality bases) assembled on 2007-01-18

> MXO02007.3prime
ATGGTCTAGAAAGCTTGCTTGCACGGTTTTCGTCTCCACAGATCCGGTCA
AGGCAATGCACTCGATCTCCACCAGAGCATCCATGGGCAGCTTGGCCACC
TGGAAACAGCTGCGGGCCGGGAAATCCTTATTGAACACCCGCTTGTAGAC
CTCATTGACTGCCCCGAAATCGTTGAGATCCTTCAAGAACACTGTGTTCT
TGATGACTTTGTCCACTCCGGAATCGGCCGCCTTTAGAACAGCCTCCAGA
TTCTCCAATGCCTTCTGCGCTTGTTCAGTGGGTCCTCCAGGAACCAGTTT
CATGGTGTCCTTGTCCAGACCCAGACATCCGGACACATACACAGTACGAT
CGGCCACCACAGCCTGGTTGTAGGGAGCCACTGGCTTGGCAGCATTTGCA
GTGCTGATAAGTTTCCTCACAATCGTCGACATGTCGAC

MXO02007.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15261-PA 417 CG15261-RA 1..414 432..19 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
UK114-RB 610 CG15261-RB 106..519 432..19 2070 100 Minus
UK114-RA 553 CG15261-RA 106..519 432..19 2070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15274620..15274849 138..367 1150 100 Plus
2L 23513712 2L 15274272..15274391 19..138 600 100 Plus
2L 23513712 2L 15274922..15274986 368..432 325 100 Plus
Blast to na_te.dros performed 2014-11-28 22:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 4064..4091 149..176 104 85.7 Plus

MXO02007.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:21 Download gff for MXO02007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15261-PA 1..417 18..432 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:54 Download gff for MXO02007.3prime
Subject Subject Range Query Range Percent Splice Strand
UK114-RA 99..527 12..438 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:50 Download gff for MXO02007.3prime
Subject Subject Range Query Range Percent Splice Strand
UK114-RA 99..527 12..438 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:50 Download gff for MXO02007.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15274264..15274390 12..137 97 <- Plus
2L 15274620..15274849 138..367 100 <- Plus
2L 15274922..15274991 368..438 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:54 Download gff for MXO02007.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15274264..15274390 12..137 97 <- Plus
arm_2L 15274620..15274849 138..367 100 <- Plus
arm_2L 15274922..15274991 368..438 95   Plus

MXO02007.5prime Sequence

438 bp (438 high quality bases) assembled on 2007-04-04

> MXO02007.5prime
CAGTCGACATGTCGACGATTGTGACCAAACTTATCAGCACTGCAAATGCT
GCCAAGCCAGTGGCTCCCTACAACCAGGCTGTGGTGGCCGATCGTACTGC
GTATGTGTCCGGATGTCTGGGTCTGGACAAGGACACCATGAAACTGGTTC
CTGGAGGACCCACTGAACAAGCGCAGAAGGCATTGGAGAATCTGGAGGCT
GTTCTAAAGGCGGCCGATTCCGGAGTGGACAAAGTCATCAAGAACACAGT
GTTCTTGAAGGATCTCAACGATTTCGGGGCAGTCAATGAGGTCTACAAGC
GGGTGTTCAATAAGGATTTCCCTGTCCGCAGCTGTTTCCAGGTGGCCAAG
CTGCCCATGGATGCTCTGGTGGATTTCGTTTTCCCCCCCCTGACCGGATC
TGTGGAGACGAAAACCGTGCAAGCAAGCTTTCTAGACC

MXO02007.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:07:38 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
UK114-RB 610 CG15261-RB 106..519 9..422 1845 96.4 Plus
UK114-RA 553 CG15261-RA 106..519 9..422 1845 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15274620..15274849 303..74 1135 99.6 Minus
2L 23513712 2L 15274272..15274391 422..303 420 90 Minus
2L 23513712 2L 15274922..15274986 73..9 295 96.9 Minus
Blast to na_te.dros performed 2014-11-28 22:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 4064..4091 292..265 104 85.7 Minus

MXO02007.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:17 Download gff for MXO02007.5prime
Subject Subject Range Query Range Percent Splice Strand
UK114-RA 96..527 1..429 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:36 Download gff for MXO02007.5prime
Subject Subject Range Query Range Percent Splice Strand
UK114-RA 96..527 1..429 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:36 Download gff for MXO02007.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15274620..15274849 74..303 99 <- Minus
2L 15274922..15274992 1..73 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:17 Download gff for MXO02007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15274620..15274849 74..303 99 <- Minus
arm_2L 15274922..15274992 1..73 91   Minus