MXO02007.3prime Sequence
438 bp (438 high quality bases) assembled on 2007-01-18
> MXO02007.3prime
ATGGTCTAGAAAGCTTGCTTGCACGGTTTTCGTCTCCACAGATCCGGTCA
AGGCAATGCACTCGATCTCCACCAGAGCATCCATGGGCAGCTTGGCCACC
TGGAAACAGCTGCGGGCCGGGAAATCCTTATTGAACACCCGCTTGTAGAC
CTCATTGACTGCCCCGAAATCGTTGAGATCCTTCAAGAACACTGTGTTCT
TGATGACTTTGTCCACTCCGGAATCGGCCGCCTTTAGAACAGCCTCCAGA
TTCTCCAATGCCTTCTGCGCTTGTTCAGTGGGTCCTCCAGGAACCAGTTT
CATGGTGTCCTTGTCCAGACCCAGACATCCGGACACATACACAGTACGAT
CGGCCACCACAGCCTGGTTGTAGGGAGCCACTGGCTTGGCAGCATTTGCA
GTGCTGATAAGTTTCCTCACAATCGTCGACATGTCGAC
MXO02007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15261-PA | 417 | CG15261-RA | 1..414 | 432..19 | 2070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UK114-RB | 610 | CG15261-RB | 106..519 | 432..19 | 2070 | 100 | Minus |
UK114-RA | 553 | CG15261-RA | 106..519 | 432..19 | 2070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15274620..15274849 | 138..367 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 15274272..15274391 | 19..138 | 600 | 100 | Plus |
2L | 23513712 | 2L | 15274922..15274986 | 368..432 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4064..4091 | 149..176 | 104 | 85.7 | Plus |
MXO02007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:21 Download gff for
MXO02007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15261-PA | 1..417 | 18..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:54 Download gff for
MXO02007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 99..527 | 12..438 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:50 Download gff for
MXO02007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 99..527 | 12..438 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:50 Download gff for
MXO02007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15274264..15274390 | 12..137 | 97 | <- | Plus |
2L | 15274620..15274849 | 138..367 | 100 | <- | Plus |
2L | 15274922..15274991 | 368..438 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:54 Download gff for
MXO02007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15274264..15274390 | 12..137 | 97 | <- | Plus |
arm_2L | 15274620..15274849 | 138..367 | 100 | <- | Plus |
arm_2L | 15274922..15274991 | 368..438 | 95 | | Plus |
MXO02007.5prime Sequence
438 bp (438 high quality bases) assembled on 2007-04-04
> MXO02007.5prime
CAGTCGACATGTCGACGATTGTGACCAAACTTATCAGCACTGCAAATGCT
GCCAAGCCAGTGGCTCCCTACAACCAGGCTGTGGTGGCCGATCGTACTGC
GTATGTGTCCGGATGTCTGGGTCTGGACAAGGACACCATGAAACTGGTTC
CTGGAGGACCCACTGAACAAGCGCAGAAGGCATTGGAGAATCTGGAGGCT
GTTCTAAAGGCGGCCGATTCCGGAGTGGACAAAGTCATCAAGAACACAGT
GTTCTTGAAGGATCTCAACGATTTCGGGGCAGTCAATGAGGTCTACAAGC
GGGTGTTCAATAAGGATTTCCCTGTCCGCAGCTGTTTCCAGGTGGCCAAG
CTGCCCATGGATGCTCTGGTGGATTTCGTTTTCCCCCCCCTGACCGGATC
TGTGGAGACGAAAACCGTGCAAGCAAGCTTTCTAGACC
MXO02007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:07:38 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UK114-RB | 610 | CG15261-RB | 106..519 | 9..422 | 1845 | 96.4 | Plus |
UK114-RA | 553 | CG15261-RA | 106..519 | 9..422 | 1845 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15274620..15274849 | 303..74 | 1135 | 99.6 | Minus |
2L | 23513712 | 2L | 15274272..15274391 | 422..303 | 420 | 90 | Minus |
2L | 23513712 | 2L | 15274922..15274986 | 73..9 | 295 | 96.9 | Minus |
Blast to na_te.dros performed 2014-11-28 22:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4064..4091 | 292..265 | 104 | 85.7 | Minus |
MXO02007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:17 Download gff for
MXO02007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 96..527 | 1..429 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:36 Download gff for
MXO02007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 96..527 | 1..429 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:36 Download gff for
MXO02007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15274620..15274849 | 74..303 | 99 | <- | Minus |
2L | 15274922..15274992 | 1..73 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:17 Download gff for
MXO02007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15274620..15274849 | 74..303 | 99 | <- | Minus |
arm_2L | 15274922..15274992 | 1..73 | 91 | | Minus |