Clone Sequence Records
MXO02008.3prime Sequence
757 bp (715 high quality bases) assembled on 2007-01-18
> MXO02008.3prime
ATGGTCTAGAAAGCTTGCGATTTTGTTGAACGCAGCGATGTCAACACTTT
GGACAAAGTCTTCCAGTTTCTCGATCTCCTCAGTCAGCCAATCGATGGAA
ACCTTATCATCCTCAACCACGCATGAAATGCTCAGTTTCTGAATGCCAAA
GGCAACTGGCACGAATTTGGAAGCTCCCCACAGTAGACCGTCCTGGGTGA
TTTTGCGGATTTCCGTCTCCATAACCTTCAGATCGGTCTCATCGTCCCAC
GGCTTAACATCCAGAATGATGTTCGACTTGGCAATAATTTGAACTTTCTT
GGCCTTCTTGGCAGCATAGGCTGCCAGCCTTTCCTCCCTTATGCGGGCGG
CCTCTCCATCCTCCTCCTCGCTGTCCGATCCAAATAGATCCACATCGTCA
TCGTCGTCGTTCGCTTCTGGTTTTTTCGCTTCGACCTCGGGCTCTTTCGA
CACTCCATTCGTCAATTTCAGCTGAGTTTCCAAGCGCTTCACTGTGGCAG
TCAAAAGTTCGTTCAACAAGGAAACCTGGGTCTTCAACTCCTTGTGTTCA
CCCTCCAATTGGGCCAGACGCTTGGCCAGCTCGGAATTTAAGCCATCGTC
CAGAGTAACGCCATCGATCTTTTCCAGCGAGTTCTGTATGTGTTCCCTAG
CCTTTGCGATTTCGCTTACTAATGGGCTGTAGTGGCTGCGATCAGTTACC
TTCTGGGGACCCTCGTAGAATCGCTTCTCGGCAAGATCGTAGCGGCTCTT
GTCAGCC
MXO02008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4912-PB | 771 | eEF1delta-RB | 30..768 | 757..19 | 3695 | 100 | Minus |
| CG4912-PA | 690 | eEF1delta-RA | 85..687 | 621..19 | 3015 | 100 | Minus |
| CG4912-PA | 690 | eEF1delta-RA | 30..87 | 757..700 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eEF1delta-RB | 928 | CG4912-RB | 96..834 | 757..19 | 3695 | 100 | Minus |
| eEF1delta-RA | 847 | CG4912-RA | 151..753 | 621..19 | 3015 | 100 | Minus |
| eEF1delta-RA | 847 | CG4912-RA | 96..153 | 757..700 | 290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10233755..10234356 | 620..19 | 3010 | 100 | Minus |
| 2L | 23513712 | 2L | 10233478..10233561 | 702..619 | 420 | 100 | Minus |
| 2L | 23513712 | 2L | 10232602..10232663 | 757..696 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:45 has no hits.
MXO02008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:21 Download gff for
MXO02008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4912-PB | 30..771 | 15..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:35 Download gff for
MXO02008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eEF1delta-RB | 96..838 | 14..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:33 Download gff for
MXO02008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eEF1delta-RB | 96..838 | 14..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:33 Download gff for
MXO02008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10232602..10232659 | 700..757 | 100 | -> | Minus |
| 2L | 10233481..10233561 | 619..699 | 100 | -> | Minus |
| 2L | 10233757..10234360 | 14..618 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:35 Download gff for
MXO02008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10232602..10232659 | 700..757 | 100 | -> | Minus |
| arm_2L | 10233481..10233561 | 619..699 | 100 | -> | Minus |
| arm_2L | 10233757..10234360 | 14..618 | 99 | | Minus |
MXO02008.5prime Sequence
792 bp (767 high quality bases) assembled on 2007-04-02
> MXO02008.5prime
CAGTCGACATGAAAGTAGAGGCATTGGACAAATTCTGGGCTGACAAGAGC
CGCTACGATCTTGCCGAGAAGCGATTCTACGAGGGTCCCCAGAAGGTAAC
TGATCGCAGCCACTACAGCCCATTAGTAAGCGAAATCGCAAAGGCTAGGG
AACACATACAGAACTCGCTGGAAAAGATCGATGGCGTTACTCTGGACGAT
GGCTTAAATTCCGAGCTGGCCAAGCGTCTGGCCCAATTGGAGGGTGAACA
CAAGGAGTTGAAGACCCAGGTTTCCTTGTTGAACGAACTTTTGACTGCCA
CAGTGAAGCGCTTGGAAACTCAGCTGAAATTGACGAATGGAGTGTCGAAA
GAGCCCGAGGTCGAAGCGAAAAAACCAGAAGCGAACGACGACGATGACGA
TGTGGATCTATTTGGATCGGACAGCGAGGAGGAGGATGGAGAGGCCGCCC
GCATAAGGGAGGAAAGGCTGGCAGCCTATGCTGCCAAGAAGGCCAAGAAA
GTTCAAATTATTGCCAAGTCGAACATCATTCTGGATGTTAAGCCGTGGGA
CGATGAGACCGATCTGAAGGTTATGGAGACGGAAATCCGCAAAATCACCC
AGGACGGTCTACTGTGGGGAGCTTCCAAATTCGTGCCAGTTGCCTTTGGC
ATTCAGAAACTGAGCATTTCATGCGTGGTTGAGGATGATAAGGTTTCCAT
CGATTGGCTGACTGAGGAGATCGAGAAACTGGAAGACTTTGTCCAAAGTG
TTGACATCGCTGCGTTCAACAAAATCGCAAGCTTTCTAGACC
MXO02008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4912-PB | 771 | eEF1delta-RB | 1..768 | 9..776 | 3840 | 100 | Plus |
| CG4912-PA | 690 | eEF1delta-RA | 85..687 | 174..776 | 3015 | 100 | Plus |
| CG4912-PA | 690 | eEF1delta-RA | 1..87 | 9..95 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eEF1delta-RB | 928 | CG4912-RB | 67..834 | 9..776 | 3840 | 100 | Plus |
| eEF1delta-RA | 847 | CG4912-RA | 151..753 | 174..776 | 3015 | 100 | Plus |
| eEF1delta-RA | 847 | CG4912-RA | 67..153 | 9..95 | 435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10233755..10234356 | 175..776 | 3010 | 100 | Plus |
| 2L | 23513712 | 2L | 10232573..10232663 | 9..99 | 455 | 100 | Plus |
| 2L | 23513712 | 2L | 10233478..10233561 | 93..176 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:22 has no hits.
MXO02008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:22 Download gff for
MXO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4912-PB | 1..771 | 9..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:34 Download gff for
MXO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eEF1delta-RB | 67..838 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:51 Download gff for
MXO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eEF1delta-RB | 67..838 | 9..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:51 Download gff for
MXO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10232573..10232659 | 9..95 | 100 | -> | Plus |
| 2L | 10233481..10233561 | 96..176 | 100 | -> | Plus |
| 2L | 10233757..10234360 | 177..781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:34 Download gff for
MXO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10232573..10232659 | 9..95 | 100 | -> | Plus |
| arm_2L | 10233481..10233561 | 96..176 | 100 | -> | Plus |
| arm_2L | 10233757..10234360 | 177..781 | 99 | | Plus |
