MXO02009.3prime Sequence
529 bp (515 high quality bases) assembled on 2007-01-18
> MXO02009.3prime
ATGGTCTAGAAAGCTTGCATAACCATCGATGAGCTTGGCTATGTTTTTGT
CTCTAATAAACTGGCATTTCTGTTCGAATTGCTGTAACGATTCTTCCATC
CTAAAGAACTCCGAATTAATCATTTTATTGTTTTTACGGATCTGATTCAG
GAATATATCCATGGGCGAAGTGTCTTCCTCTGAGTGTACTTCCTGATTTT
GCTGCACGATAGCTGGGGTTCCACTTGAAATGGTGGATAGATTGGAACGT
CCGATTTTCTCGCCACTTTCTACGAACTCAGCGATGGCGTTGCGGAATTT
CTCGGGTATCAGAAATAGTCGATCAACATTTCCCTTTTTGTAACACAGAT
AGGCGCTCTTCATTTGAAACCATTTTCTGCGTATTTGGGTGGGCGACTTG
TTTGGAAAACCCCTTTTTTTCATCTGATTGGCGATTTGGATGAAGGTGTA
CTGGGTGGTGCTGGTGGACAGGGCTCCCTGGCAGTTGTTCACCTCCTTAA
TCAGGTCGAGCATGCACTCATTTGGCGGA
MXO02009.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-PA | 552 | CG5727-RA | 49..549 | 519..19 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 772 | CG5727-RA | 115..627 | 529..19 | 2515 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10210225..10210555 | 189..519 | 1655 | 100 | Plus |
| 2L | 23513712 | 2L | 10209998..10210169 | 19..190 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:08 has no hits.
MXO02009.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:23 Download gff for
MXO02009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 38..552 | 18..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:22 Download gff for
MXO02009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 116..631 | 13..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:30 Download gff for
MXO02009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 116..631 | 13..528 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:30 Download gff for
MXO02009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10209994..10210167 | 13..188 | 98 | <- | Plus |
| 2L | 10210225..10210566 | 189..528 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:22 Download gff for
MXO02009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10209994..10210167 | 13..188 | 98 | <- | Plus |
| arm_2L | 10210225..10210566 | 189..528 | 99 | | Plus |
MXO02009.5prime Sequence
573 bp (573 high quality bases) assembled on 2007-04-04
> MXO02009.5prime
CAGTCGACATGAAGTCCGAGAAACTGAAACGAAACTTTTGGGTCTCCGCC
GAAATAGAGTGCATGCTCGACCTGATTAAGGAGGTGAACAACTGCCAGGG
AGCCCTGTCCACCAGCACCACCCAGTACACCTTCATCCAAATCGCCAATC
AGATGAAAAAAAGGGGTTTTCCAAACAAGTCGCCCACCCAAATACGCAGA
AAATGGTTTCAAATGAAGAGCGCCTATCTGTGTTACAAAAAGGGAAATGT
TGATCGACTATTTCTGATACCCGAGAAATTCCGCAACGCCATCGCTGAGT
TCGTAGAAAGTGGCGAGAAAATCGGACGTTCCAATCTATCCACCATTTCA
AGTGGAACCCCAGCTATCGTGCAGCAAAATCAGGAAGTACACTCAGAGGA
AGACACTTCGCCCATGGATATATTCCTGAATCAGATCCGTAAAAACAATA
AAATGATTAATTCGGAGTTCTTTAGGATGGAAGAATCGTTACAGCAATTC
GAACAGAAATGCCAGTTTATTAGAGACAAAAACATAGCCAAGCTCATCGA
TGGTTATGCAAGCTTTCTAGACC
MXO02009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:07:39 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 772 | CG5727-RA | 78..627 | 8..557 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10210225..10210604 | 387..8 | 1900 | 100 | Minus |
| 2L | 23513712 | 2L | 10209998..10210169 | 557..386 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:59 has no hits.
MXO02009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:44 Download gff for
MXO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 72..631 | 1..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:40 Download gff for
MXO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 72..631 | 1..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:40 Download gff for
MXO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10209994..10210167 | 388..563 | 98 | <- | Minus |
| 2L | 10210225..10210608 | 1..387 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:44 Download gff for
MXO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10209994..10210167 | 388..563 | 98 | <- | Minus |
| arm_2L | 10210225..10210608 | 1..387 | 98 | | Minus |
