MXO02011.3prime Sequence
426 bp (426 high quality bases) assembled on 2007-01-18
> MXO02011.3prime
ATGGTCTAGAAAGCTTGCTTGGTAAATTCCCAGAGATTTCTCCACCACAG
CGTGGGGCTGACGCATATGCTCGCTGTTCTCGGGCAAGTTCATGAAGTCC
TCGAAGCCAATGGAATCACAGCGGCCAGTCAGGACATCGTCCATGAAGTT
GCTGGACGAAAGGAAGGGCAGGCGGCCCACCTGACGTGCGGCGAAGCGCT
CCATGCCCATCTTGAGGGGCACGCCGAGGCCCTCGTGGTTGCGCAGCATC
TGCATGTTGCGGTTGTACTGGTGCTCGTTGTAGTTCAGCTCCGAGTCGCG
CAGCCGGTGGACGTGGGCCAGTTGGTTCAGGCAGTTGGCCTCGGTGGGCA
TTCCCACACGGCCGGTGGCGTTCAGCACGGACACCTCGGCGGGCTGGACT
TTCAGTGATGGCTGATACATGTCGAC
MXO02011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9324-PA | 405 | Pomp-RA | 1..402 | 420..19 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pomp-RA | 1092 | CG9324-RA | 128..529 | 420..19 | 2010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20787849..20788115 | 418..152 | 1335 | 100 | Minus |
| 2L | 23513712 | 2L | 20788400..20788535 | 154..19 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:57 has no hits.
MXO02011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:23 Download gff for
MXO02011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9324-PA | 1..405 | 15..420 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:40 Download gff for
MXO02011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pomp-RA | 120..538 | 8..426 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:38 Download gff for
MXO02011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pomp-RA | 120..538 | 8..426 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:38 Download gff for
MXO02011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20787844..20788115 | 152..426 | 98 | -> | Minus |
| 2L | 20788403..20788544 | 8..151 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:40 Download gff for
MXO02011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20787844..20788115 | 152..426 | 98 | -> | Minus |
| arm_2L | 20788403..20788544 | 8..151 | 96 | | Minus |
MXO02011.5prime Sequence
875 bp (783 high quality bases) assembled on 2007-04-03
> MXO02011.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATCCTA
AAAATGCGGATGACACATCGATTTACATGTTCTATCAAAAAGTCGGCGAA
ACTTCTATTGACAGCTGGAAAAACG
MXO02011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:07:41 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 21:06:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 21:06:53 has no hits.
Blast to na_te.dros performed on 2014-11-28 21:06:53 has no hits.
MXO02011.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:41:59 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:41:59 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:55:09 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:55:09 has no hits.
