MXO02014.3prime Sequence
504 bp (504 high quality bases) assembled on 2007-01-18
> MXO02014.3prime
ATGGTCTAGAAAGCTTGCAATGCCGCGATAGGATCGGTGGGCCAGGAAGG
CGCTGATGAAGTACAGCACCGCATTGACCAGGCCCAAAACACCGGCTGCC
ATATAGGCGTCGTGCTTTACATCGCGCAGCTTGAGCAGCAGGATGGTGGA
CGAGACCAGGATCAGGATGGCGGCCACACTGTGGTAAATCAGCTCATAGA
TCGTCTTGGCAATAATGCCGCCCGTGCTGAGCGACGTGAGGCAGGCGAGG
AGTAAACAGAACGTTCCTATCATAAAGGTAACGGCCATCAGATAATGGAA
CAGATCCTGCTGGCCATAGAAGTATCTGTGGTAGTCCTGGTAGTTGAACG
CCAGAATTCCCACAATGGAAGCACCAATGATCAGCTCGAAGAGCTTGAGG
ATGCCGGGGAAAGTCTTCAGATAGCCCGTGTTCAGGACAATGTAGGAGGT
GTTGGTGGTGCTGGTGGTGGTGCGGGTAATGGTCACTGAATGCGACATGT
CGAC
MXO02014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1572-PA | 483 | CG1572-RA | 1..480 | 498..19 | 2400 | 100 | Minus |
| CG1572-PB | 483 | CG1572-RB | 1..480 | 498..19 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1572-RD | 889 | CG1572-RD | 76..555 | 498..19 | 2400 | 100 | Minus |
| CG1572-RC | 1245 | CG1572-RC | 197..676 | 498..19 | 2400 | 100 | Minus |
| CG1572-RB | 974 | CG1572-RB | 161..640 | 498..19 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11555925..11556112 | 195..382 | 940 | 100 | Plus |
| X | 23542271 | X | 11555619..11555795 | 19..195 | 885 | 100 | Plus |
| X | 23542271 | X | 11556184..11556300 | 382..498 | 585 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 72..126 | 184..130 | 104 | 65.5 | Minus |
MXO02014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:24 Download gff for
MXO02014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-PB | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:19 Download gff for
MXO02014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-RB | 155..649 | 7..504 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:16 Download gff for
MXO02014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-RB | 155..649 | 7..504 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:16 Download gff for
MXO02014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11555610..11555795 | 7..195 | 97 | <- | Plus |
| X | 11555926..11556111 | 196..381 | 100 | <- | Plus |
| X | 11556184..11556306 | 382..504 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:19 Download gff for
MXO02014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11449643..11449828 | 7..195 | 97 | <- | Plus |
| arm_X | 11449959..11450144 | 196..381 | 100 | <- | Plus |
| arm_X | 11450217..11450339 | 382..504 | 97 | | Plus |
MXO02014.5prime Sequence
868 bp (671 high quality bases) assembled on 2007-04-03
> MXO02014.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATCCTA
AAAATGCGGATGACACATCGATTTACATGTTCTATCAAAAAGTCGGCGAA
ACTTCTATTGACAGCTGG
MXO02014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:07:44 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 19:58:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 19:58:52 has no hits.
Blast to na_te.dros performed on 2014-11-28 19:58:53 has no hits.
MXO02014.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:45:08 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:45:08 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:21:29 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:21:29 has no hits.
