Clone Sequence Records
MXO02015.5prime Sequence
387 bp (387 high quality bases) assembled on 2007-04-02
> MXO02015.5prime
CAGTCGACATGAAGTTCCAATACAAGGAGGAGCACGCCTTCGAGAAGCGT
CGCGCCGAGGGCGACAAGATCCGTCGCAAATATCCAGACCGTGTGCCCGT
CATCGTCGAGAAGGCTCCCAAGGCGCGCATCGGTGATTTGGACAAGAAGA
AGTACCTGGTGCCTTCCGACCTGACCGTCGGTCAGTTCTACTTCCTCATT
CGCAAGCGCATCCACCTGCGTCCCGAGGATGCCCTCTTCTTCTTTGTGAA
CAACGTCATTCCACCAACATCGGCTACCATGGGCTCCCTGTACCAGGAAC
ATCACGAGGAGGACTATTTCCTGTACTTTGCCTACTCCGATGAGAATGTT
TACGGCATGGCCAAAATTAACGCATGCTTTCTAGACC
MXO02015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32672-PA | 366 | Atg8a-RA | 1..363 | 9..371 | 1790 | 99.7 | Plus |
| CG12334-PA | 363 | Atg8b-RA | 58..104 | 60..106 | 160 | 93.6 | Plus |
| CG12334-PA | 363 | Atg8b-RA | 181..281 | 183..283 | 155 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..631 | 8..371 | 1805 | 99.7 | Plus |
| Atg8a-RC | 1183 | CG32672-RC | 328..600 | 99..371 | 1350 | 99.6 | Plus |
| Atg8a-RB | 1010 | CG32672-RB | 155..427 | 99..371 | 1350 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 297..99 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 17724567..17724904 | 346..9 | 760 | 81.7 | Minus |
| X | 23542271 | X | 10767979..10768071 | 100..8 | 465 | 100 | Minus |
| X | 23542271 | X | 10765461..10765537 | 371..295 | 370 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 21:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 7..69 | 110 | 69.7 | Plus |
MXO02015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:25 Download gff for
MXO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32672-PA | 1..366 | 9..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:28:50 Download gff for
MXO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 256..635 | 1..380 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:35 Download gff for
MXO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 259..638 | 1..380 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:35 Download gff for
MXO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765454..10765535 | 297..380 | 94 | <- | Minus |
| X | 10765605..10765802 | 99..296 | 100 | <- | Minus |
| X | 10767981..10768075 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:28:50 Download gff for
MXO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10659487..10659568 | 297..380 | 94 | <- | Minus |
| arm_X | 10659638..10659835 | 99..296 | 100 | <- | Minus |
| arm_X | 10662014..10662108 | 1..98 | 95 | | Minus |
MXO02015.3prime Sequence
387 bp (387 high quality bases) assembled on 2007-01-18
> MXO02015.3prime
ATGGTCTAGAAAGCTTGCGTTAATTTTGGCCATGCCGTAAACATTCTCAT
CGGAGTAGGCAATGTACAGGAAATAGTCCTCCTCGTGATGTTCCTGGTAC
AGGGAGCCCATGGTAGCCGATGTTGGTGGAATGACGTTGTTCACAAAGAA
GAAGAGGGCATCCTCGGGACGCAGGTGGATGCGCTTGCGAATGAGGAAGT
AGAACTGACCGACGGTCAGGTCGGAAGGCACCAGGTACTTCTTCTTGTCC
AAATCACCGATGCGCGCCTTGGGAGCCTTCTCGACGATGACGGGCACACG
GTCTGGATATTTGCGACGGATCTTGTCGCCCTCGGCGCGACGCTTCTCGA
AGGCGTGCTCCTCCTTGTATTGGAACTTCATGTCGAC
MXO02015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32672-PA | 366 | Atg8a-RA | 1..363 | 381..19 | 1815 | 100 | Minus |
| CG12334-PA | 363 | Atg8b-RA | 58..104 | 330..284 | 160 | 93.6 | Minus |
| CG12334-PA | 363 | Atg8b-RA | 181..281 | 207..107 | 155 | 86.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..631 | 382..19 | 1820 | 100 | Minus |
| Atg8a-RC | 1183 | CG32672-RC | 328..600 | 291..19 | 1365 | 100 | Minus |
| Atg8a-RB | 1010 | CG32672-RB | 155..427 | 291..19 | 1365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 93..291 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 17724567..17724904 | 44..381 | 775 | 82 | Plus |
| X | 23542271 | X | 10767979..10768071 | 290..382 | 465 | 100 | Plus |
| X | 23542271 | X | 10765461..10765537 | 19..95 | 385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 383..321 | 110 | 69.7 | Minus |
MXO02015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:24 Download gff for
MXO02015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32672-PA | 1..366 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:40 Download gff for
MXO02015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 260..635 | 10..387 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:40 Download gff for
MXO02015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 263..638 | 10..387 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:40 Download gff for
MXO02015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765454..10765535 | 10..93 | 96 | <- | Plus |
| X | 10765605..10765802 | 94..291 | 100 | <- | Plus |
| X | 10767981..10768076 | 292..387 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:40 Download gff for
MXO02015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10659487..10659568 | 10..93 | 96 | <- | Plus |
| arm_X | 10659638..10659835 | 94..291 | 100 | <- | Plus |
| arm_X | 10662014..10662109 | 292..387 | 96 | | Plus |
