MXO02017.3prime Sequence
603 bp (447 high quality bases) assembled on 2007-01-18
> MXO02017.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGCAGACCAAGCTCATAATCTTGTCAA
TAACTTCATATCGCTCCTTTTCATACTTCTTGATATGCTTTATCCAGTGT
CCGCGCACTTTCTTCCAGCGGTTCATATTGGAGGACAGAAGATCGGAGGT
ACTGGCACCTTGGAGAGCCTTTTCCCGCTTCTTGTCCTCCTGGCTGAACT
CCAGACGAGGCGGAATTATGGGCAGATCCGTGGACTTGGCCTGCGGGAGC
TGGTTGATCACCTTTATCTCGCCGCTTTTAATTTGGGACAGGATTTCTTC
GCCGTTGTCCTCACGTTTGGTGGCCGTGAGTGAAGCATCTGTTTGAAATG
CACCCACAGCTGGATTCTTGGGTTGATTTGCCATCCATGCGCGGCATATG
GGGTACAAAGGAGTCTTATCCTGGTATTTGGACAGGTCCAAACTTCGCTC
AAACAGGCGCATTACGTANGTCTCGCCGGGCGCCTTCTGGGCGACTGCCG
CTGCTCCAACGCTCTTCTTGTAGAGCACTCTCCTGGGCTTGATGCGTCCT
CCGGCGCCGGCTGCGGCTGCACTCGAGGATGTCGAAGGCTTCTCGCTAGA
GCC
MXO02017.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15119-PA | 804 | mip40-RA | 217..801 | 603..19 | 2881 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-RA | 1092 | CG15119-RA | 316..900 | 603..19 | 2899 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19291297..19291881 | 19..603 | 2899 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:46 has no hits.
MXO02017.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:26 Download gff for
MXO02017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15119-PA | 217..804 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:11 Download gff for
MXO02017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 316..914 | 6..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:12 Download gff for
MXO02017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 316..914 | 6..603 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:12 Download gff for
MXO02017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19291283..19291881 | 6..603 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:11 Download gff for
MXO02017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15178788..15179386 | 6..603 | 98 | | Plus |
MXO02017.5prime Sequence
825 bp (713 high quality bases) assembled on 2007-04-02
> MXO02017.5prime
CAGTCGACATGAAGACTGTGCCGAACATGAAGGAAACGGCCCTGCGCTTG
CGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAACCTGCCGCC
GGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCCCTCGAAGA
AGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAAAGCTAGAT
CCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCTTCGACATC
CTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGCCAGGAGAG
TGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGAAGGCGCCC
GGCGAGACCTACGTAATGCGCCTGTTTGATCGAAGTTCGCACCTGTCCAA
ATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATGGATGGCAA
ATCAACCCAAGAATCCAGCTGTGGGTGCATTTCAAACAGATGCTTCACTC
ACGGCCACCAAACGTGAGGACAACGGCGAAGAAATCCTGTCCCAAATTAA
AAGCGGCGAGATAAAGGTGATCAACCAGCTCCCGCAGGCCAAGTCCACGG
ATCTGCCCATAATTCCGCCTCGTCTGGAGTTCAGCCAGGAGGACAAGAAG
CGGGAAAAGGCTCTCCAAGGTGCCAGTACCTCCGATCTTCTGTCCTCCAA
TATGAACCGCTGGAAGAAAGTGCGCGGACACTGGATAAAGCATATCAAGA
AGTATGAAAAGGAGCGATATGAAGTTATTGACAAGATTATGAGCTTGGTC
TGCAAAAACGCAAGCTTTCTAGACC
MXO02017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15119-PA | 804 | mip40-RA | 1..801 | 9..809 | 3880 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-RA | 1092 | CG15119-RA | 100..900 | 9..809 | 3930 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19291297..19292097 | 809..9 | 3930 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 21:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2397 | 151..201 | 120 | 70.6 | Plus |
MXO02017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:26 Download gff for
MXO02017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15119-PA | 1..804 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:36 Download gff for
MXO02017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 94..914 | 1..822 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:09 Download gff for
MXO02017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 94..914 | 1..822 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:09 Download gff for
MXO02017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19291283..19292103 | 1..822 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:36 Download gff for
MXO02017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15178788..15179608 | 1..822 | 98 | | Minus |
