Clone Sequence Records
MXO02018.3prime Sequence
618 bp (546 high quality bases) assembled on 2007-01-18
> MXO02018.3prime
ATGGTCTAGAAAGCTTGCAATAACTATATCATCGATTTGCTCGTCGTTCA
GGGCGCGCAGATTGCATTTGCATAGGTAGGCCAGAATGCGTTTCTCCGCC
TTAATTCGGTTTGCTTCGCCCAGTCCTTCAAGCAGGGCTTCTATCCTCTT
TTCTGCTTGAGCCACTGGCGTTGCATGGGCAGGATTTGTGGGTGGTGCTG
GTGCAGCTCCCGCAACGGCCAGCTGCTCATCCATGGCCTCCTGGAGCGGA
TCCTCATCATCGTTGACCTCGTCGCTGGATTTCAGTGTGCTCCTACTCAG
ATCACCCGAATTTCGGTGATTAATCGGATGGTGGTGATGCTGCAGGAATT
TCAAATGCGGCAGAAGACTCCAATCGGAGCCAGTGCCTCCGGCCTTTTCT
TTGGCCAGCTCCCGACGCTGTTTGGCCACCAGATGATTCCAACGACTGAC
ACAGGCACTAGCTTCTGAATTTAATGAAGTGGCGATGCTGCTCCAGATTT
CCGGATGTCGCTTCTTATGCGCTTCGTAGGGTGCGTTTCTAAGTTCGCGN
CTCAATAAAGCTTGGGGAATTAGCCCCTAACCAGCCTCAAATAAGGTCGC
GGTGGTCGAAAACTGGCG
MXO02018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-PA | 594 | CG6683-RA | 46..591 | 566..19 | 2660 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 91..665 | 601..19 | 2725 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514199..8514643 | 19..463 | 2225 | 100 | Plus |
| 3L | 28110227 | 3L | 8514700..8514787 | 462..549 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:10 has no hits.
MXO02018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:26 Download gff for
MXO02018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 10..594 | 18..610 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:01 Download gff for
MXO02018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 84..675 | 11..610 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:55 Download gff for
MXO02018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 84..675 | 11..610 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:55 Download gff for
MXO02018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514189..8514641 | 11..461 | 99 | <- | Plus |
| 3L | 8514700..8514838 | 462..610 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:01 Download gff for
MXO02018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507289..8507741 | 11..461 | 99 | <- | Plus |
| arm_3L | 8507800..8507938 | 462..610 | 93 | | Plus |
MXO02018.5prime Sequence
615 bp (615 high quality bases) assembled on 2007-04-02
> MXO02018.5prime
CAGTCGACATGTCGCAGTTCGACACGCGACTTATTGAGCTGGTTAGGGCT
AATCCCAAGCTTTATGAGCGCGAACTTAGAAACGCACCCTACGAAGCGCA
TAAGAAGCGACATCCGGAAATCTGGAGCAGCATCGCCACTTCATTAAATT
CAGAAGCTAGTGCCTGTGTCAGTCGTTGGAATCATCTGGTGGCCAAACAG
CGTCGGGAGCTGGCCAAAGAAAAGGCCGGAGGCACTGGCTCCGATTGGAG
TCTTCTGCCGCATTTGAAATTCCTGCAGCATCACCACCATCCGATTAATC
ACCGAAATTCGGGTGATCTGAGTAGGAGCACACTGAAATCCAGCGACGAG
GTCAACGATGATGAGGATCCGCTCCAGGAGGCCATGGATGAGCAGCTGGC
CGTTGCGGGAGCTGCACCAGCACCACCCACAAATCCTGCCCATGCAACGC
CAGTGGCTCAAGCAGAAAAGAGGATAGAAGCCCTGCTTGAAGGACTGGGC
GAAGCAAACCGAATTAAGGCGGAGAAACGCATTCTGGCCTACCTATGCAA
ATGCAATCTGCGCGCCCTGAACGACGAGCAAATCGATGATATAGTTATTG
CAAGCTTTCTAGACC
MXO02018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-PA | 594 | CG6683-RA | 1..591 | 9..599 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 75..665 | 9..599 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514199..8514643 | 599..155 | 2225 | 100 | Minus |
| 3L | 28110227 | 3L | 8514700..8514847 | 156..9 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:37 has no hits.
MXO02018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:27 Download gff for
MXO02018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 9..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:16 Download gff for
MXO02018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 68..675 | 1..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:33 Download gff for
MXO02018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 68..675 | 1..607 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:33 Download gff for
MXO02018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514189..8514641 | 157..607 | 99 | <- | Minus |
| 3L | 8514700..8514853 | 1..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:16 Download gff for
MXO02018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507800..8507953 | 1..156 | 97 | | Minus |
| arm_3L | 8507289..8507741 | 157..607 | 99 | <- | Minus |
