MXO02019.3prime Sequence
456 bp (456 high quality bases) assembled on 2007-01-18
> MXO02019.3prime
ATGGTCTAGAAAGCTTGCGAACTCTGTGTCCTTGTATTTGCGAATTAGCT
GCTGCTTAAGCTTCAGCTGATTTCGCAGTAGTTCCAGTCTCTGTTGCTGC
TCCTCCTTATTGAAATCGATCCCGGGGAGCTGGCGGATTTGCTCGCGTGC
CGATTCGAAGCGTTTTTGAAGTTCAAAGATCTTGTGGTTGCAATCCTGGG
ACTCGCGCAGCTTAACGGCGTTCTCCAGAGGATCCTTTTCCACGCAGCGC
ACAATGTCGTAGATTATCGGCAGAATCTCAATGTCCAACTGGTCAACCGT
CAGATGGCACTGGCCGCCGATTCCGTTGGATGTTTGCGTCTCCTGCGATA
TGGTCGGCTCGAAGGGGGAGTTCGAAGTCTGAACCAGGCCGTCGGCGGTT
AGGATGGGTTTTCTGTCCTCGATCTGATTGTTTGGCGACAAATCCATCAT
GTCGAC
MXO02019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5134-PC | 435 | MED9-RC | 1..432 | 450..19 | 2160 | 100 | Minus |
| CG5134-PB | 528 | MED9-RB | 1..272 | 450..179 | 1360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED9-RC | 871 | CG42517-RC | 63..494 | 450..19 | 2160 | 100 | Minus |
| CG42518-RA | 871 | CG42518-RA | 63..494 | 450..19 | 2160 | 100 | Minus |
| CG42518-RB | 825 | CG42518-RB | 43..448 | 424..19 | 2030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18167317..18167522 | 450..245 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 18167771..18167934 | 182..19 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 18167657..18167721 | 245..181 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 112..48 | 115 | 66.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 107..46 | 112 | 64.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1128..1204 | 101..23 | 111 | 62 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 104..49 | 109 | 66.1 | Minus |
MXO02019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:28 Download gff for
MXO02019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5134-PC | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:08 Download gff for
MXO02019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED9-RC | 63..499 | 13..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:00 Download gff for
MXO02019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42518-RA | 63..499 | 13..450 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:00 Download gff for
MXO02019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18167317..18167522 | 245..450 | 100 | -> | Minus |
| 2R | 18167658..18167721 | 181..244 | 100 | -> | Minus |
| 2R | 18167773..18167939 | 13..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:08 Download gff for
MXO02019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14054822..14055027 | 245..450 | 100 | -> | Minus |
| arm_2R | 14055163..14055226 | 181..244 | 100 | -> | Minus |
| arm_2R | 14055278..14055444 | 13..180 | 98 | | Minus |
MXO02019.5prime Sequence
456 bp (456 high quality bases) assembled on 2007-04-02
> MXO02019.5prime
CAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGGACAGAAAA
CCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCCCCCTTCGA
GCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGGCGGCCAGT
GCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGATAATCTAC
GACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCCGTTAAGCT
GCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCAAAAACGCT
TCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCGATTTCAAT
AAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAGCTGAAGCT
TAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCGCAAGCTTTC
TAGACC
MXO02019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5134-PC | 435 | MED9-RC | 1..432 | 9..440 | 2160 | 100 | Plus |
| CG5134-PB | 528 | MED9-RB | 1..272 | 9..280 | 1360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED9-RC | 871 | CG42517-RC | 63..494 | 9..440 | 2160 | 100 | Plus |
| CG42518-RA | 871 | CG42518-RA | 63..494 | 9..440 | 2160 | 100 | Plus |
| CG42518-RB | 825 | CG42518-RB | 43..448 | 35..440 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18167317..18167522 | 9..214 | 1030 | 100 | Plus |
| 2R | 25286936 | 2R | 18167771..18167934 | 277..440 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 18167657..18167721 | 214..278 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 347..411 | 115 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 352..413 | 112 | 64.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1128..1204 | 358..436 | 111 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 355..410 | 109 | 66.1 | Plus |
MXO02019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:28 Download gff for
MXO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5134-PC | 1..435 | 9..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:18 Download gff for
MXO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED9-RC | 63..499 | 9..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:25 Download gff for
MXO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42518-RA | 63..499 | 9..446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:25 Download gff for
MXO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18167317..18167522 | 9..214 | 100 | -> | Plus |
| 2R | 18167658..18167721 | 215..278 | 100 | -> | Plus |
| 2R | 18167773..18167939 | 279..446 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:18 Download gff for
MXO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14054822..14055027 | 9..214 | 100 | -> | Plus |
| arm_2R | 14055163..14055226 | 215..278 | 100 | -> | Plus |
| arm_2R | 14055278..14055444 | 279..446 | 98 | | Plus |
