MXO02021.5prime Sequence
893 bp (767 high quality bases) assembled on 2007-04-02
> MXO02021.5prime
CAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGCACGAGCCC
GACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTGCAGAAAGT
CATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACTGGAACTGG
CCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATCCCACCCGG
TGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAGTTGCGATC
CAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGAATGTGGTC
TAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGCGTCTGTAC
TTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCTCTCTTTCT
GCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGAAAGAAATC
GGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCTTTACAGGA
ACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTCTACATAGG
CTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGTGGTGCGCA
AGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGTGGTGTGGT
ATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAGTTTCCCAC
CGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGACGGACGCT
GTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCGGAATCAAA
CAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAACACATTGAAC
TTGTTCTTCGGCACAGGAGAGAGTAAAGAAGCAAGCTTTCTAA
MXO02021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3358-PB | 942 | CG3358-RB | 66..898 | 8..840 | 4165 | 100 | Plus |
| CG3358-PA | 876 | CG3358-RA | 1..832 | 9..840 | 4160 | 100 | Plus |
| CG3358-PB | 942 | CG3358-RB | 897..939 | 838..880 | 190 | 97.6 | Plus |
| CG3358-PA | 876 | CG3358-RA | 831..873 | 838..880 | 190 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3358-RG | 968 | CG3358-RG | 78..951 | 8..880 | 4330 | 99.8 | Plus |
| CG3358-RF | 1216 | CG3358-RF | 78..951 | 8..880 | 4330 | 99.8 | Plus |
| CG3358-RE | 950 | CG3358-RE | 60..933 | 8..880 | 4330 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6923879..6924486 | 162..769 | 3040 | 100 | Plus |
| 2R | 25286936 | 2R | 6923505..6923659 | 8..162 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 6924551..6924664 | 768..880 | 505 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:02:43 has no hits.
MXO02021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:29 Download gff for
MXO02021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-PB | 59..942 | 1..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:56 Download gff for
MXO02021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-RE | 53..936 | 1..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:25 Download gff for
MXO02021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-RE | 53..936 | 1..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:25 Download gff for
MXO02021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6923498..6923659 | 1..162 | 97 | -> | Plus |
| 2R | 6923880..6924486 | 163..769 | 100 | -> | Plus |
| 2R | 6924553..6924667 | 770..884 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:56 Download gff for
MXO02021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2811003..2811164 | 1..162 | 97 | -> | Plus |
| arm_2R | 2811385..2811991 | 163..769 | 100 | -> | Plus |
| arm_2R | 2812058..2812172 | 770..884 | 96 | | Plus |
