MXO02022.5prime Sequence
634 bp (493 high quality bases) assembled on 2007-04-02
> MXO02022.5prime
CAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTCTCAATGCG
GATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGACAATGGAGC
GGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCCGAATCTCA
CCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCAAGACGGCC
TTTTTCGAGACGCACATGATGGTCCAGAATCCGGAACAGTGGATAGAGCC
CATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGAACCGGTGC
AGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCATGAAGGTG
GGCCTGGCCATTAAGCCGGGCACCGAGGTATTTTATCCGCCCAAGTACTT
GAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGGTTTTGGCG
GACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGCTGCGCAAA
AACTACCCCAACCTGCACATCGAGGTGGACGGAGGTGTGGGACCCAAGAC
TATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTCGGGAACCG
CCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCAT
MXO02022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30499-PA | 666 | CG30499-RA | 1..372 | 9..380 | 1835 | 99.7 | Plus |
| CG30499-PA | 666 | CG30499-RA | 385..626 | 393..634 | 1160 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30499-RB | 891 | CG30499-RB | 99..724 | 9..634 | 2965 | 98.2 | Plus |
| CG30499-RA | 1060 | CG30499-RA | 268..893 | 9..634 | 2965 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7564601..7564842 | 634..393 | 1180 | 99.2 | Minus |
| 2R | 25286936 | 2R | 7565299..7565484 | 194..9 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 7565055..7565242 | 380..193 | 925 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:25 has no hits.
MXO02022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:30 Download gff for
MXO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30499-PA | 1..626 | 9..634 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:56 Download gff for
MXO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30499-RA | 263..893 | 2..634 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:39 Download gff for
MXO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30499-RA | 263..893 | 2..634 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:39 Download gff for
MXO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7564601..7564850 | 385..634 | 97 | <- | Minus |
| 2R | 7565048..7565240 | 195..384 | 96 | <- | Minus |
| 2R | 7565299..7565489 | 2..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:56 Download gff for
MXO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3452106..3452355 | 385..634 | 97 | <- | Minus |
| arm_2R | 3452553..3452745 | 195..384 | 96 | <- | Minus |
| arm_2R | 3452804..3452994 | 2..194 | 97 | | Minus |
