MXO02023.3prime Sequence
830 bp (773 high quality bases) assembled on 2007-01-18
> MXO02023.3prime
ATGGTCTAGAAAGCTTGCTGTTCTCAGCGTAGGCCGCCTTGAGCGCCGTA
TTCTAGCTAAGGGTAAATAATCATCAATTTCCACTCGCTTCAGCCGGATG
CGACACCTTTTAATGTAGTATTTCGCGCTTTTAAGAGGAACGAAGCGTGG
TGTTTCTATCGGTCGTTCGTCACATTTTGTTGTATCTTTAATTTTAGGTT
CAATAGCTGTTTCTATTTTGATTTTGACATCATTTGATCCTTTGCAAGCA
TTATTATATCTGATTCTTTTATTGGCACTTGCGACATTGGGTCTTATTTT
GTGTGGGCTAATGCCGAATCTGTCCATGGCCGGACTGAGTAAATTGTCTG
CTGGGAGCTCTTTCACCCGTATCGCTTTAAGAAATTCGTCGTATTCGCTC
TGAACCGTCTCCAGGTCCTTAGGACCCAGCTTTCGAGTAGCTTTCTCTTG
GCGCTCTTGCTCCAGGATGAGGGCGAGGACCTCCACTTCTAAATGCCGGC
GTTCCGCTTGCGCCATAGATTTCACGAAAGGCAACTGACTGAGAAGAAAC
TCCTGACACTTGGTTTTCGGCACATCCGCCGGATTCGGGGCTTGCATGCG
AATGTGCACATCGTGCATCACCCGCCACAGAGGTTCAGGGATTTGCCCTT
TGGAACCGGCCAAGGCTCTGACCAGCGGGCGCAGCTTCACCCAACGCAGC
TTCAGTTCACTTACGGAGAACGGAGTACTCAGCTCAACGTGCTCGTAGCT
TTGGTTAAAGGACTTGGCCAGCTGATCCCAACCCCAGAGTCGTAGTCAAC
GTCCATTTTGGGCTCCACTGCGGGATGATA
MXO02023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18468-PA | 1005 | CG18468-RA | 189..1002 | 830..19 | 3990 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lhr-RA | 1188 | CG18468-RA | 317..1130 | 830..19 | 4020 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17431348..17432161 | 830..19 | 3970 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:08 has no hits.
MXO02023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:30 Download gff for
MXO02023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18468-PA | 190..1005 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:47 Download gff for
MXO02023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lhr-RA | 318..1139 | 8..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:43 Download gff for
MXO02023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lhr-RA | 318..1139 | 8..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:43 Download gff for
MXO02023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17431349..17432170 | 8..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:47 Download gff for
MXO02023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13318854..13319675 | 8..829 | 99 | | Minus |
MXO02023.5prime Sequence
606 bp (562 high quality bases) assembled on 2007-04-02
> MXO02023.5prime
CAGTCGACATGTGTTGTAGAACGTTGGAGAAACACAGTGCGAAAAATATT
AAAATGAGTACCGACAGCGCCGAGGAAACGGTGATCCATTCCACTGTTCC
CCATTTGGAGATTAACATATCAAACACCAACATCAGCGGCCAGATTGTTT
TAAACGACTTGCTGCTCATGGAGATGCTCGCCCGGTATCCCTTCCTTATC
ATCCCGCAGGTGGAGCCCAAAATGGACGTTGACTACGACTCCTGGGGTTG
GGATCAGCTGGCCAAGTCCTTTAACCAAAGCTACGAGCACGTTGAGCTGA
GTACTCCGTTCTCCGTAAGTGAACTGAAGCTGCGTTGGGTGAAGCTGCGC
CCGCTGGTCAGAGCCTTGGCCGGTTCCAAAGGGCAAATCCCTGAACCTCT
GTGGCGGGTGATGCACGATGTGCACATTCGCATGCAAGCCCCGAATCCGG
CGGATGTGCCGAAAACCAAGTGTCAGGAGTTTCTTCTCAGTCAGTTGCCT
TTCGTGAAATCTATGGCGCAAGCGGAACGCCGGCATTTAGAAGTGGAGGT
CCTCGCCCTCATCCTNGGAGCAAGAGCGCCAAGAGAAAGCTACTCGAAAG
CTGGGT
MXO02023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18468-PA | 1005 | CG18468-RA | 1..557 | 9..565 | 2785 | 100 | Plus |
| CG18468-PA | 1005 | CG18468-RA | 558..597 | 567..606 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lhr-RA | 1188 | CG18468-RA | 129..725 | 9..606 | 2965 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17431160..17431756 | 9..606 | 2940 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:12 has no hits.
MXO02023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:31 Download gff for
MXO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18468-PA | 1..597 | 9..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:04 Download gff for
MXO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lhr-RA | 124..725 | 1..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:33 Download gff for
MXO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lhr-RA | 124..725 | 1..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:33 Download gff for
MXO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17431155..17431756 | 1..606 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:04 Download gff for
MXO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13318660..13319261 | 1..606 | 99 | | Plus |
