Clone MXO02024 Report

Search the DGRC for MXO02024

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:24
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG9205-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02024.3prime Sequence

491 bp (398 high quality bases) assembled on 2007-01-18

> MXO02024.3prime
ATGGTCTAGAAAGCTTGCAAGCACAAGAGGCACGGCCTCTGCCACCGGCT
GGTTGATCTCCTGGTGGCGTTGCAGTAATCCCAAGCACTGGTGCAGGCAC
TGGGTGCTGGCCGTGGAGATCGCCTTGAGCAAAAGAAGATCGGGATCCGT
TGGCGAGAAGGAAGCGCAGTCGATGCTCTCGATGGCCCTGGCCAGAGAAG
CGTTGCATTGTTCCGTGAGAAACAGAGCTTGGCGCGCTGAAACCATGGCA
TCGGAGGCGGCAAGCAATTCCCGCGGAGGAAGCGGCGACGAGTTGCTGAT
GTCCATCGCCTTCATGTGACTCTCGACCACCGCCCGCAGGCCATCCACCC
ACTCCTGACGGGCCCTGGCATCGTTGGCCCTCAGCTTTACCGTATCGCCG
GAGGCGCANGCGATGGCGAACGTCCTAGAGTCCTCGTCACTCGGGTACAC
CACTGCGCCCGCCAGCTGCACCTGGCCCTGGAACACTGGCA

MXO02024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-PA 675 CG9205-RA 213..672 478..19 2256 99.5 Minus
CG9205-PB 675 CG9205-RB 213..672 478..19 2256 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 941 CG9205-RB 388..861 490..19 2279 98.9 Minus
CG9205-RA 1105 CG9205-RA 552..1025 490..19 2279 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1035684..1035956 478..206 1339 99.3 Minus
3L 28110227 3L 1036031..1036218 206..19 940 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:45:06 has no hits.

MXO02024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:31 Download gff for MXO02024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 199..675 16..490 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:39 Download gff for MXO02024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 552..1025 19..490 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:22 Download gff for MXO02024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 552..1025 19..490 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:22 Download gff for MXO02024.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1036032..1036212 25..205 100 -> Minus
3L 1035670..1035956 206..490 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:39 Download gff for MXO02024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1036032..1036212 25..205 100 -> Minus
arm_3L 1035670..1035956 206..490 98 -> Minus

MXO02024.5prime Sequence

697 bp (697 high quality bases) assembled on 2007-04-02

> MXO02024.5prime
CAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAATCGGCCAAA
CTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATGAAGGGATG
GCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCTGAGCTACT
ACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCTCGCCCCAC
GTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGCGCAGTGGT
GTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTGCGCCTCCG
GCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTCAGGAGTGG
GTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCGATGGACAT
CAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGCCTCCGATG
CCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAATGCAACGCT
TCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTCTCGCCAAC
GGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAGCACCCAGT
GCCTGCACCAGTGGCTGGGATTACTGGCACCCCCCCAAGAAAATCACCCA
GCCGTGGCAAAAGGCCGTGCTTCTTGTGCTTGCAAGCTTTCTAGACC

MXO02024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-PA 675 CG9205-RA 1..618 9..626 3040 99.6 Plus
CG9205-PB 675 CG9205-RB 1..618 9..626 3040 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 941 CG9205-RB 190..861 9..681 3130 97.9 Plus
CG9205-RA 1105 CG9205-RA 354..1025 9..681 3130 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1035559..1035956 96..493 1990 100 Plus
3L 28110227 3L 1036031..1036218 493..681 670 91.5 Plus
3L 28110227 3L 1035374..1035462 9..97 445 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:06:01 has no hits.

MXO02024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:31 Download gff for MXO02024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 9..684 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:00 Download gff for MXO02024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 346..1025 1..681 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:43 Download gff for MXO02024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 346..1025 1..681 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:43 Download gff for MXO02024.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1035366..1035461 1..96 95 -> Plus
3L 1035560..1035956 97..493 100 -> Plus
3L 1036032..1036218 494..681 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:00 Download gff for MXO02024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1035366..1035461 1..96 95 -> Plus
arm_3L 1035560..1035956 97..493 100 -> Plus
arm_3L 1036032..1036218 494..681 92   Plus