Clone MXO02026 Report

Search the DGRC for MXO02026

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:26
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG9628-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02026.3prime Sequence

510 bp (510 high quality bases) assembled on 2007-01-18

> MXO02026.3prime
ATGGTCTAGAAAGCTTGCTTCTAGATCACCGTGGACACCTAAACGCAGGG
TGATGAGTATGTCCAGCAAGAAGACCAGCGAGGTAACCAAGGCAATCGAG
GCGGAAGCCATCACGAGATCCAAACGATGCATATTCGGGTGCCAGTAGTT
GCGATCCTTGGTGGTGGACCAATCCCGGAAAAGCAGGGCGGTTACGGCCA
CGAAGAGCACAAAGGCCACTAGATTCCACAAAGTAGCCGTACGCCATGGA
GTCAAATCACCGAAGAGCGCCATTATCAGATAGATTGCCGTGTAGATGGT
CAGTGCTCCAAAGGTCACATAGCAAAGGGAAGCCACTCGGGGAGTGATGA
ACACCCGCAGATGAGAATTGGTGGCCGGCTCGTCGATCAGACCCAAACAG
CATATAAGCAGGCACAGTTCCACAATCTTGATGCATATCACCGTGTAGGT
GGCCTTTTTGTTTCCATGAGTTGTGGCAAAGGAATTATCGTCAGCCGGCG
ACATGTCGAC

MXO02026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PB 528 CG9628-RB 34..525 510..19 2435 99.7 Minus
CG9628-PA 489 CG9628-RA 1..486 504..19 2430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 206..697 510..19 2445 99.8 Minus
CG9628-RB 1053 CG9628-RB 178..669 510..19 2445 99.8 Minus
CG9628-RA 1125 CG9628-RA 250..741 510..19 2445 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627790 253..19 1175 100 Minus
3L 28110227 3L 14627334..14627496 415..253 815 100 Minus
3L 28110227 3L 14627031..14627126 510..415 465 99 Minus
Blast to na_te.dros performed on 2014-11-28 22:27:21 has no hits.

MXO02026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:33 Download gff for MXO02026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 16..510 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:30 Download gff for MXO02026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..741 19..510 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:35 Download gff for MXO02026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..741 19..510 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:35 Download gff for MXO02026.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14627031..14627126 415..510 98 -> Minus
3L 14627335..14627495 254..414 100 -> Minus
3L 14627556..14627790 19..253 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:30 Download gff for MXO02026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620131..14620226 415..510 98 -> Minus
arm_3L 14620435..14620595 254..414 100 -> Minus
arm_3L 14620656..14620890 19..253 100   Minus

MXO02026.5prime Sequence

510 bp (510 high quality bases) assembled on 2007-04-02

> MXO02026.5prime
CAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAACTCATGGA
AACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTGGAACTGTG
CCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCACCAATTCTC
ATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCTATGTGACC
TTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATGGCGCTCTT
CGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCTAGTGGCCT
TTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATTGGTCCACC
ACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTGGATCTCGT
GATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTTCTTGCTGG
ACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAGAAGCAAGC
TTTCTAGACC

MXO02026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PB 528 CG9628-RB 34..525 3..494 2435 99.7 Plus
CG9628-PA 489 CG9628-RA 1..486 9..494 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 206..697 3..494 2445 99.8 Plus
CG9628-RB 1053 CG9628-RB 178..669 3..494 2445 99.8 Plus
CG9628-RA 1125 CG9628-RA 250..741 3..494 2445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627790 260..494 1175 100 Plus
3L 28110227 3L 14627334..14627496 98..260 815 100 Plus
3L 28110227 3L 14627031..14627126 3..98 465 99 Plus
Blast to na_te.dros performed on 2014-11-28 18:38:44 has no hits.

MXO02026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:33 Download gff for MXO02026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 33..528 1..497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:25 Download gff for MXO02026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 249..741 1..494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:33 Download gff for MXO02026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 249..741 1..494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:33 Download gff for MXO02026.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14627030..14627126 1..98 97 -> Plus
3L 14627335..14627495 99..259 100 -> Plus
3L 14627556..14627790 260..494 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:25 Download gff for MXO02026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620130..14620226 1..98 97 -> Plus
arm_3L 14620435..14620595 99..259 100 -> Plus
arm_3L 14620656..14620890 260..494 100   Plus