Clone MXO02027 Report

Search the DGRC for MXO02027

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:27
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG3226-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02027.3prime Sequence

700 bp (584 high quality bases) assembled on 2007-01-18

> MXO02027.3prime
ATGGTCTAGAAAGCTTGCAAGATCGTCGAAAGAATCCAATCCGCCGCCCG
TCTCCTTGCCAAGCTTCGCCTTATCCTGACTCTCGGTCCAAGCTTTGGCG
ATCATCTGCTTCGTCTTGGAGTCACCGTCGTTGTACATCTTCTTCATGAT
GTTAACAAGCGCCGATTCGGGATTGTCGCCATCTTTGGACAATTCGCTGT
CCTTCTTTTGCTTCAAACGCTTCTGGATAGCGGTGAGCACATCCCAGTGC
TTGTCCTCAACCTTCTGCAGATAGATGGCCACCATGTCGGTCTTGATCTT
TCGGTAGCTCTTCTCCACATCGATACTGTGCAGCAGATTGTTTACGGTCA
GCCCAAAGTCCTTGCCCTGAAGATCGCGCACATGGAGCTGCAACGAGTTA
GGTGTGTAGGTGACTGTCACATTCTCCTCCGTGCAGCCCTGCACTCCGTT
CAAGGTGATGAAGAGCTTCACGAACTTGGCGCTCTGGTCCCAGCCGTAGT
CGGTCAGCTCGTGCAGATATCTCTTGGCTTCGCTCGACCCGGTGGCCTGT
CGCTCTGCCGCAATTTTGGCCTTCAACTCCAGATTGATCATCTCCCGTTC
CGCCTCCGCTTTAGCGGTGGTCAGCACGTCTTTTACGCGGGCACCTTTCG
CCTGCTGCAGGAAGGCCGCCAGCTCGGCCACATCGGTTTTCAGCTGTTCC

MXO02027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-PA 693 CG3226-RA 9..690 700..19 3335 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 894 CG3226-RA 97..778 700..19 3365 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6653229..6653732 19..522 2520 100 Plus
X 23542271 X 6653908..6654084 521..697 840 98.3 Plus
Blast to na_te.dros performed on 2014-11-28 21:47:29 has no hits.

MXO02027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:34 Download gff for MXO02027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 9..693 18..700 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:16 Download gff for MXO02027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 97..778 19..700 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:05 Download gff for MXO02027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 97..778 19..700 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:05 Download gff for MXO02027.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6653229..6653730 19..520 100 <- Plus
X 6653908..6654084 521..700 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:16 Download gff for MXO02027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6547262..6547763 19..520 100 <- Plus
arm_X 6547941..6548117 521..700 96   Plus

MXO02027.5prime Sequence

617 bp (602 high quality bases) assembled on 2007-04-02

> MXO02027.5prime
CAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCGAGCTGGCG
GCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTGCTGACCAC
CGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTTGAAGGCCA
AAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCAAGAGATAT
CTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAGTTCGTGAA
GCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGAGAATGTGA
CAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCGATCTTCAG
GGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGTATCGATGT
GGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCATCTATCTGC
AGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCCAGAAGCGT
TTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGACAATCCCGA
ATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGGTGACTCCA
AGACGAATCAGATGATC

MXO02027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-PA 693 CG3226-RA 1..609 9..617 3020 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 894 CG3226-RA 89..697 9..617 3030 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6653310..6653732 617..195 2100 99.8 Minus
X 23542271 X 6653908..6654084 196..20 885 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:10:21 has no hits.

MXO02027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:34 Download gff for MXO02027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..609 9..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:07 Download gff for MXO02027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..697 9..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:37 Download gff for MXO02027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..697 9..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:37 Download gff for MXO02027.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6653310..6653730 197..617 99 <- Minus
X 6653908..6654084 20..196 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:07 Download gff for MXO02027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6547343..6547763 197..617 99 <- Minus
arm_X 6547941..6548117 20..196 100   Minus