Clone MXO02028 Report

Search the DGRC for MXO02028

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:28
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptAP-1sigma-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02028.3prime Sequence

495 bp (495 high quality bases) assembled on 2007-01-18

> MXO02028.3prime
ATGGTCTAGAAAGCTTGCGCCCAGGCCGTGATCGTCGAAGAAACTCTGCG
GGGTCTCATCCTCTTGGAGCAGATCCTGCGAGGCAATCGCCTTAAGTACG
TTCTTTTTGGACGTCTCCTGGATTTCGCCGCCAATGAGCAGCTCATCCAG
GATAAAGTATGCTTTTTCAAAGTTAAAGATAATGTCCAGCTCGCAGACGC
TGCCGAAGTACTTATCCAACAGCTCCACATAGCGATGAATGATCTCCAGT
GTCAGCAGTTCGTTGTCGTTCTGCTCGATGGCGCAACAGAAATACAAGCT
GGCATACCTTTTGTAGACAATTTTGCAGTCCTTCCACTCCAGAAAGGAGC
ACATTTTGGGCTTGCGGGCCAGTATCGTAGTGACCAGTTCCCGGGTGATC
TTCTTTTTCACCTTATCCGGATAGGCCATGTACCACTTTTGTAACCGCAG
TTTGCCCTGCCGACTAAACAGCAGCATGAAAAGCATCATGTCGAC

MXO02028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5864-PA 474 AP-1sigma-RA 1..471 489..19 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-RA 1079 CG5864-RA 146..616 489..19 2355 100 Minus
AP-1sigma-RC 795 CG5864-RC 146..576 489..59 2155 100 Minus
AP-1sigma-RB 1181 CG5864-RB 146..576 489..59 2155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23959031..23959212 487..306 910 100 Minus
3R 32079331 3R 23959456..23959594 198..60 695 100 Minus
3R 32079331 3R 23959278..23959390 309..197 565 100 Minus
3R 32079331 3R 23962049..23962092 62..19 220 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:30:21 has no hits.

MXO02028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:35 Download gff for MXO02028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5864-PA 1..474 15..489 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:08 Download gff for MXO02028.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 142..622 11..495 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:43 Download gff for MXO02028.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 142..622 11..495 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:43 Download gff for MXO02028.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23959026..23959210 308..495 97 -> Minus
3R 23959280..23959388 199..307 100 -> Minus
3R 23959456..23959593 61..198 100 -> Minus
3R 23962051..23962098 11..60 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:08 Download gff for MXO02028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19784748..19784932 308..495 97 -> Minus
arm_3R 19785002..19785110 199..307 100 -> Minus
arm_3R 19785178..19785315 61..198 100 -> Minus
arm_3R 19787773..19787820 11..60 94   Minus

MXO02028.5prime Sequence

495 bp (495 high quality bases) assembled on 2007-04-02

> MXO02028.5prime
CAGTCGACATGATGCTTTTCATGCTGCTGTTGAGTCGGCAGGGCAAACTG
CGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAAAAGAAGAT
CACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAAAATGTGCT
CCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGTATGCCAGC
TTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTGCTGACACT
GGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTTCGGCAGCG
TCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACTTTATCCTG
GATGAGCTGCTCATTGGCGGCGAAATCTTTTAGACGCCCAAAAAGAACGT
ACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGAGACCCCGC
AGAGTTTCTTCGACGATCACGGCCTGGGCGCAAGCTTTCTAGACC

MXO02028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5864-PA 474 AP-1sigma-RA 1..369 9..377 1820 99.7 Plus
CG5864-PA 474 AP-1sigma-RA 374..471 382..479 465 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-RA 1079 CG5864-RA 146..616 9..479 2265 98.7 Plus
AP-1sigma-RC 795 CG5864-RC 146..576 9..439 2065 98.6 Plus
AP-1sigma-RB 1181 CG5864-RB 146..576 9..439 2065 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23959031..23959212 11..192 895 99.5 Plus
3R 32079331 3R 23959456..23959594 300..438 620 96.4 Plus
3R 32079331 3R 23959278..23959390 189..301 565 100 Plus
3R 32079331 3R 23962049..23962092 436..479 220 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:27:11 has no hits.

MXO02028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:35 Download gff for MXO02028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5864-PA 1..474 9..483 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:00 Download gff for MXO02028.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 146..622 9..487 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:29 Download gff for MXO02028.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 146..622 9..487 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:29 Download gff for MXO02028.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23959024..23959210 1..190 96 -> Plus
3R 23959280..23959388 191..299 100 -> Plus
3R 23959456..23959593 300..437 96 -> Plus
3R 23962051..23962098 438..487 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:00 Download gff for MXO02028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19784746..19784932 1..190 96 -> Plus
arm_3R 19785002..19785110 191..299 100 -> Plus
arm_3R 19785178..19785315 300..437 96 -> Plus
arm_3R 19787773..19787820 438..487 94   Plus