MXO02028.3prime Sequence
495 bp (495 high quality bases) assembled on 2007-01-18
> MXO02028.3prime
ATGGTCTAGAAAGCTTGCGCCCAGGCCGTGATCGTCGAAGAAACTCTGCG
GGGTCTCATCCTCTTGGAGCAGATCCTGCGAGGCAATCGCCTTAAGTACG
TTCTTTTTGGACGTCTCCTGGATTTCGCCGCCAATGAGCAGCTCATCCAG
GATAAAGTATGCTTTTTCAAAGTTAAAGATAATGTCCAGCTCGCAGACGC
TGCCGAAGTACTTATCCAACAGCTCCACATAGCGATGAATGATCTCCAGT
GTCAGCAGTTCGTTGTCGTTCTGCTCGATGGCGCAACAGAAATACAAGCT
GGCATACCTTTTGTAGACAATTTTGCAGTCCTTCCACTCCAGAAAGGAGC
ACATTTTGGGCTTGCGGGCCAGTATCGTAGTGACCAGTTCCCGGGTGATC
TTCTTTTTCACCTTATCCGGATAGGCCATGTACCACTTTTGTAACCGCAG
TTTGCCCTGCCGACTAAACAGCAGCATGAAAAGCATCATGTCGAC
MXO02028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5864-PA | 474 | AP-1sigma-RA | 1..471 | 489..19 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 1079 | CG5864-RA | 146..616 | 489..19 | 2355 | 100 | Minus |
AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 489..59 | 2155 | 100 | Minus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 489..59 | 2155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 487..306 | 910 | 100 | Minus |
3R | 32079331 | 3R | 23959456..23959594 | 198..60 | 695 | 100 | Minus |
3R | 32079331 | 3R | 23959278..23959390 | 309..197 | 565 | 100 | Minus |
3R | 32079331 | 3R | 23962049..23962092 | 62..19 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:30:21 has no hits.
MXO02028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:35 Download gff for
MXO02028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 15..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:08 Download gff for
MXO02028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 142..622 | 11..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:43 Download gff for
MXO02028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 142..622 | 11..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:43 Download gff for
MXO02028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959026..23959210 | 308..495 | 97 | -> | Minus |
3R | 23959280..23959388 | 199..307 | 100 | -> | Minus |
3R | 23959456..23959593 | 61..198 | 100 | -> | Minus |
3R | 23962051..23962098 | 11..60 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:08 Download gff for
MXO02028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19784748..19784932 | 308..495 | 97 | -> | Minus |
arm_3R | 19785002..19785110 | 199..307 | 100 | -> | Minus |
arm_3R | 19785178..19785315 | 61..198 | 100 | -> | Minus |
arm_3R | 19787773..19787820 | 11..60 | 94 | | Minus |
MXO02028.5prime Sequence
495 bp (495 high quality bases) assembled on 2007-04-02
> MXO02028.5prime
CAGTCGACATGATGCTTTTCATGCTGCTGTTGAGTCGGCAGGGCAAACTG
CGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAAAAGAAGAT
CACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAAAATGTGCT
CCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGTATGCCAGC
TTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTGCTGACACT
GGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTTCGGCAGCG
TCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACTTTATCCTG
GATGAGCTGCTCATTGGCGGCGAAATCTTTTAGACGCCCAAAAAGAACGT
ACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGAGACCCCGC
AGAGTTTCTTCGACGATCACGGCCTGGGCGCAAGCTTTCTAGACC
MXO02028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5864-PA | 474 | AP-1sigma-RA | 1..369 | 9..377 | 1820 | 99.7 | Plus |
CG5864-PA | 474 | AP-1sigma-RA | 374..471 | 382..479 | 465 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 1079 | CG5864-RA | 146..616 | 9..479 | 2265 | 98.7 | Plus |
AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 9..439 | 2065 | 98.6 | Plus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 9..439 | 2065 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 11..192 | 895 | 99.5 | Plus |
3R | 32079331 | 3R | 23959456..23959594 | 300..438 | 620 | 96.4 | Plus |
3R | 32079331 | 3R | 23959278..23959390 | 189..301 | 565 | 100 | Plus |
3R | 32079331 | 3R | 23962049..23962092 | 436..479 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:11 has no hits.
MXO02028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:35 Download gff for
MXO02028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 9..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:00 Download gff for
MXO02028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 9..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:29 Download gff for
MXO02028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 9..487 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:29 Download gff for
MXO02028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959024..23959210 | 1..190 | 96 | -> | Plus |
3R | 23959280..23959388 | 191..299 | 100 | -> | Plus |
3R | 23959456..23959593 | 300..437 | 96 | -> | Plus |
3R | 23962051..23962098 | 438..487 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:00 Download gff for
MXO02028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19784746..19784932 | 1..190 | 96 | -> | Plus |
arm_3R | 19785002..19785110 | 191..299 | 100 | -> | Plus |
arm_3R | 19785178..19785315 | 300..437 | 96 | -> | Plus |
arm_3R | 19787773..19787820 | 438..487 | 94 | | Plus |