Clone MXO02030 Report

Search the DGRC for MXO02030

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:30
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31673-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02030.3prime Sequence

725 bp (690 high quality bases) assembled on 2007-01-18

> MXO02030.3prime
ATGGTCTAGAAAGCTTGCGTAGGCTGGCCTTATCATGGGCTTCCCTTCGA
TGGCGTTCAAAATATTATTGGCAGCAAGCAATCCCATTTCAATGGTAGTC
TTCATTGTCTGAGTGCCCATATGGGGAAGGATAACACAATTGGGCACATT
GAGAAGAGGACTATTGGCGGGCAGTGGTTCTGGTGTGGTCACATCCAAGC
CTGCGGCAGAAATTGTACCATTTGTCAGGGCGTCATGAAGGTCAGTTTGA
TTTACCAGACCTCCTCTGGCCACATTGACAAACACAGAACTCCTCTTCAT
CAGATTAAATGCCTTTCCATTGAATTTCTCTCTAGTTTCGTTTGTAAGTG
GAGCAGCTACCACCAGGAAGTCACTTTCTTGTAAAAGTTGTTCAAACGAC
ACATGCTCTGCCTTGAAGTCGCCATCGTTTTCCTTTCGGGTGCGAGTATG
GTAGATGATCTTGGCCACATCCCAGCACTGCAATCGCTTGGCGATGGCCT
GACTAATACCGCCAAAGCCAAAGAAACCGATGACGGAATCGCGAATCTCT
TGACCCATCATCCAGTTGATCTGCTCGATTTTCCATTGGGACCTCTCGAT
TTCGGTGCGACCGGCATGAAAGTGACGACCGGCTGCAATCATCAAGCCAA
TGGCGAGATCGGCCACTGCATTTTTCACCACCCCGGGAGTGTGGCCCAAT
GGGATTCCCCTCTTCTGGAACTCGG

MXO02030.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-PA 981 CG31673-RA 274..978 723..19 3525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 1126 CG31673-RA 335..1039 723..19 3525 100 Minus
CG31673-RB 1221 CG31673-RB 335..1036 723..19 3470 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20830279..20830614 594..259 1680 100 Minus
2L 23513712 2L 20829943..20830075 723..591 665 100 Minus
2L 23513712 2L 20830669..20830796 262..135 640 100 Minus
2L 23513712 2L 20830860..20830976 135..19 585 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:30:31 has no hits.

MXO02030.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:36 Download gff for MXO02030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 271..981 16..725 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:15 Download gff for MXO02030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 332..1039 19..725 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:48 Download gff for MXO02030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 332..1039 19..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:48 Download gff for MXO02030.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20830861..20830976 19..134 100   Minus
2L 20829940..20830073 593..725 99 -> Minus
2L 20830281..20830612 261..592 100 -> Minus
2L 20830671..20830796 135..260 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:15 Download gff for MXO02030.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20829940..20830073 593..725 99 -> Minus
arm_2L 20830281..20830612 261..592 100 -> Minus
arm_2L 20830671..20830796 135..260 100 -> Minus
arm_2L 20830861..20830976 19..134 100   Minus

MXO02030.5prime Sequence

946 bp (860 high quality bases) assembled on 2007-04-02

> MXO02030.5prime
CAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGATTTCGCAT
CCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGTGGAGCGGA
GACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGATCCTGCAGA
AGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGCCCCTGAAT
GCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTGAGCACCAT
GTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAAGAGGGGAA
TCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGGCCGATCTC
GCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCCGGTCGCAC
CGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTGGATGATGG
GTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTGGCGGTATT
AGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCCAAGATCAT
CTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAAGGCAGAGC
ATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGGTGGTAGCT
GCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAGGCATTTAA
TCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGGAGGTCTGG
TAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAATTTCTGCC
GCAGGCTTGGATGTGACCACACCAGAACCACTGCCCGCCAATAGTCCTCT
TCTCAATGTGCCAAATTGTGTTATCCTTCCCCATATGGGCACTCAGACAA
TGAAGACTACCATTGAAATGGGGATTGCTTGCTGCCAATAATATTT

MXO02030.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-PA 981 CG31673-RA 1..914 9..922 4545 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 1126 CG31673-RA 58..998 5..946 4655 99.7 Plus
CG31673-RB 1221 CG31673-RB 58..995 5..946 4600 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20829666..20830075 5..414 2035 99.8 Plus
2L 23513712 2L 20830279..20830614 411..746 1680 100 Plus
2L 23513712 2L 20830669..20830796 743..870 625 99.2 Plus
2L 23513712 2L 20830860..20830935 870..946 335 98.7 Plus
Blast to na_te.dros performed on 2014-11-28 22:10:26 has no hits.

MXO02030.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:36 Download gff for MXO02030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 1..937 9..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:48 Download gff for MXO02030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 54..998 1..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:47 Download gff for MXO02030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 54..998 1..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:47 Download gff for MXO02030.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20829662..20830073 1..412 99 -> Plus
2L 20830281..20830612 413..744 100 -> Plus
2L 20830671..20830796 745..870 99 -> Plus
2L 20830861..20830935 871..946 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:48 Download gff for MXO02030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20829662..20830073 1..412 99 -> Plus
arm_2L 20830281..20830612 413..744 100 -> Plus
arm_2L 20830671..20830796 745..870 99 -> Plus
arm_2L 20830861..20830935 871..946 98   Plus