MXO02030.3prime Sequence
725 bp (690 high quality bases) assembled on 2007-01-18
> MXO02030.3prime
ATGGTCTAGAAAGCTTGCGTAGGCTGGCCTTATCATGGGCTTCCCTTCGA
TGGCGTTCAAAATATTATTGGCAGCAAGCAATCCCATTTCAATGGTAGTC
TTCATTGTCTGAGTGCCCATATGGGGAAGGATAACACAATTGGGCACATT
GAGAAGAGGACTATTGGCGGGCAGTGGTTCTGGTGTGGTCACATCCAAGC
CTGCGGCAGAAATTGTACCATTTGTCAGGGCGTCATGAAGGTCAGTTTGA
TTTACCAGACCTCCTCTGGCCACATTGACAAACACAGAACTCCTCTTCAT
CAGATTAAATGCCTTTCCATTGAATTTCTCTCTAGTTTCGTTTGTAAGTG
GAGCAGCTACCACCAGGAAGTCACTTTCTTGTAAAAGTTGTTCAAACGAC
ACATGCTCTGCCTTGAAGTCGCCATCGTTTTCCTTTCGGGTGCGAGTATG
GTAGATGATCTTGGCCACATCCCAGCACTGCAATCGCTTGGCGATGGCCT
GACTAATACCGCCAAAGCCAAAGAAACCGATGACGGAATCGCGAATCTCT
TGACCCATCATCCAGTTGATCTGCTCGATTTTCCATTGGGACCTCTCGAT
TTCGGTGCGACCGGCATGAAAGTGACGACCGGCTGCAATCATCAAGCCAA
TGGCGAGATCGGCCACTGCATTTTTCACCACCCCGGGAGTGTGGCCCAAT
GGGATTCCCCTCTTCTGGAACTCGG
MXO02030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-PA | 981 | CG31673-RA | 274..978 | 723..19 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 1126 | CG31673-RA | 335..1039 | 723..19 | 3525 | 100 | Minus |
CG31673-RB | 1221 | CG31673-RB | 335..1036 | 723..19 | 3470 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20830279..20830614 | 594..259 | 1680 | 100 | Minus |
2L | 23513712 | 2L | 20829943..20830075 | 723..591 | 665 | 100 | Minus |
2L | 23513712 | 2L | 20830669..20830796 | 262..135 | 640 | 100 | Minus |
2L | 23513712 | 2L | 20830860..20830976 | 135..19 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:30:31 has no hits.
MXO02030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:36 Download gff for
MXO02030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 271..981 | 16..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:15 Download gff for
MXO02030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 332..1039 | 19..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:48 Download gff for
MXO02030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 332..1039 | 19..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:48 Download gff for
MXO02030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20830861..20830976 | 19..134 | 100 | | Minus |
2L | 20829940..20830073 | 593..725 | 99 | -> | Minus |
2L | 20830281..20830612 | 261..592 | 100 | -> | Minus |
2L | 20830671..20830796 | 135..260 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:15 Download gff for
MXO02030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20829940..20830073 | 593..725 | 99 | -> | Minus |
arm_2L | 20830281..20830612 | 261..592 | 100 | -> | Minus |
arm_2L | 20830671..20830796 | 135..260 | 100 | -> | Minus |
arm_2L | 20830861..20830976 | 19..134 | 100 | | Minus |
MXO02030.5prime Sequence
946 bp (860 high quality bases) assembled on 2007-04-02
> MXO02030.5prime
CAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGATTTCGCAT
CCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGTGGAGCGGA
GACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGATCCTGCAGA
AGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGCCCCTGAAT
GCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTGAGCACCAT
GTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAAGAGGGGAA
TCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGGCCGATCTC
GCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCCGGTCGCAC
CGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTGGATGATGG
GTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTGGCGGTATT
AGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCCAAGATCAT
CTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAAGGCAGAGC
ATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGGTGGTAGCT
GCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAGGCATTTAA
TCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGGAGGTCTGG
TAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAATTTCTGCC
GCAGGCTTGGATGTGACCACACCAGAACCACTGCCCGCCAATAGTCCTCT
TCTCAATGTGCCAAATTGTGTTATCCTTCCCCATATGGGCACTCAGACAA
TGAAGACTACCATTGAAATGGGGATTGCTTGCTGCCAATAATATTT
MXO02030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-PA | 981 | CG31673-RA | 1..914 | 9..922 | 4545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 1126 | CG31673-RA | 58..998 | 5..946 | 4655 | 99.7 | Plus |
CG31673-RB | 1221 | CG31673-RB | 58..995 | 5..946 | 4600 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20829666..20830075 | 5..414 | 2035 | 99.8 | Plus |
2L | 23513712 | 2L | 20830279..20830614 | 411..746 | 1680 | 100 | Plus |
2L | 23513712 | 2L | 20830669..20830796 | 743..870 | 625 | 99.2 | Plus |
2L | 23513712 | 2L | 20830860..20830935 | 870..946 | 335 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:26 has no hits.
MXO02030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:36 Download gff for
MXO02030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 1..937 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:48 Download gff for
MXO02030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 54..998 | 1..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:47 Download gff for
MXO02030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 54..998 | 1..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:47 Download gff for
MXO02030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20829662..20830073 | 1..412 | 99 | -> | Plus |
2L | 20830281..20830612 | 413..744 | 100 | -> | Plus |
2L | 20830671..20830796 | 745..870 | 99 | -> | Plus |
2L | 20830861..20830935 | 871..946 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:48 Download gff for
MXO02030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20829662..20830073 | 1..412 | 99 | -> | Plus |
arm_2L | 20830281..20830612 | 413..744 | 100 | -> | Plus |
arm_2L | 20830671..20830796 | 745..870 | 99 | -> | Plus |
arm_2L | 20830861..20830935 | 871..946 | 98 | | Plus |