MXO02033.3prime Sequence
480 bp (480 high quality bases) assembled on 2007-01-18
> MXO02033.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTGTTGTTCTTGGCATTTTTACCAT
CGGCGGCGTTCTCGATCTTGGCGCGCTTCTTTGGGTGCTCGTCCTCCTCG
TCCTCGGCGACATCATCCTCCTCGTCATCCTCCTCCATGTCGACCACCTC
CACATCGTCCTTGATGTTGTGCCCGTGGATGTAGACGGGTCCGCTGCCCT
TGATCAGCTTGAATGTCACCTTCGACTCGTAGAACTCCACGTCGGGATTG
ACGGCGCGGGTCTCTCCGGCCTTCAATACGGCGATGGGAATTTGCACGGA
GTCCTTGGGTGTGTTCACCTCGACCACGTTGAACTCGTTCTCCTTGGCCT
CGGCGCCCAAGAGGATCTGTTTGATGACCAGCTTCTGGCCGCGTGCGTAG
TCCTCGTCCACATCCCACGTGACGCTGTCGCTCTCGGCGGTCAAAGTGAC
TCCGTAGAATGATTCCTCAGCCATGTCGAC
MXO02033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7917-PA | 459 | Nlp-RA | 1..456 | 474..19 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nlp-RB | 914 | CG7917-RB | 83..539 | 475..19 | 2285 | 100 | Minus |
| Nlp-RA | 1080 | CG7917-RA | 249..705 | 475..19 | 2285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30009676..30009977 | 320..19 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 30005287..30005425 | 453..315 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:40 has no hits.
MXO02033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:38 Download gff for
MXO02033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7917-PA | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:22 Download gff for
MXO02033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlp-RA | 243..714 | 8..480 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:10 Download gff for
MXO02033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlp-RA | 243..714 | 8..480 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:10 Download gff for
MXO02033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30005288..30005421 | 319..452 | 100 | -> | Minus |
| 3R | 30009678..30009986 | 8..318 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:22 Download gff for
MXO02033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25831010..25831143 | 319..452 | 100 | -> | Minus |
| arm_3R | 25835400..25835708 | 8..318 | 98 | | Minus |
MXO02033.5prime Sequence
480 bp (480 high quality bases) assembled on 2007-04-02
> MXO02033.5prime
CAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGACCGCCGAG
AGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGCGGCCAGAA
GCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGAGAACGAGT
TCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAATTCCCATC
GCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGACGTGGAGTT
CTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGGACCCGTCT
ACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCGACATGGAG
GAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGACGAGCACCC
AAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAATGCCAAGA
ACAACAAGAAGAAGGCAAGCTTTCTAGACC
MXO02033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7917-PA | 459 | Nlp-RA | 1..456 | 9..464 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nlp-RB | 914 | CG7917-RB | 83..539 | 8..464 | 2285 | 100 | Plus |
| Nlp-RA | 1080 | CG7917-RA | 249..705 | 8..464 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30009676..30009977 | 163..464 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 30005287..30005425 | 30..168 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:48 has no hits.
MXO02033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:38 Download gff for
MXO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7917-PA | 1..459 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:24 Download gff for
MXO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlp-RA | 249..714 | 8..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:21 Download gff for
MXO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlp-RA | 249..714 | 8..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:21 Download gff for
MXO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30005033..30005055 | 8..30 | 100 | -> | Plus |
| 3R | 30005288..30005421 | 31..164 | 100 | -> | Plus |
| 3R | 30009678..30009986 | 165..475 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:24 Download gff for
MXO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25830755..25830777 | 8..30 | 100 | -> | Plus |
| arm_3R | 25831010..25831143 | 31..164 | 100 | -> | Plus |
| arm_3R | 25835400..25835708 | 165..475 | 98 | | Plus |
