MXO02035.5prime Sequence
585 bp (585 high quality bases) assembled on 2007-04-04
> MXO02035.5prime
CAGTCGACATGAGTGCCACAGATGCCCCTACAGCCGATAGTGGCGCTAAA
CGAAAATCTTCTGAAGATATCACACACAATTGCAACGCAAATTTTGGCGC
AGAAAACGGCCTAAGAAAGCGCGTAAAATCGGAGGAGCCTGTGGCGTCCA
TTAAAGATGAAACAAATCCTGAAGTTCCTATGAAAATAAAAGCTGAGCCA
GTGGAGAATGCAGATGAGCCCACAAGCACTACTCCTGCGATCAAGATTAA
AGCCGAACCAGCGGACAATGGAAACTCACCTGCAGCTGCGATGGTAAAAA
CCGAGCCCACTAATAGCAATGCACAGGACGCCGCCGACGAGTCTACCGTA
TCTTCAAGCAGTATTAGGACTTCTTGTCGCTTCGGCATACGATGCTACAG
GCGAAATCCAGCTCATCGTAGTGCAGAAGCTCATCCGGGGGATCAGGATT
ACCGGCGACCAAACTTTCCAGCGCCACCCCTCGGAACTCCAGCTTGTCCT
TTCGGTAACGCATGCTATCGCCGTAACCCAGTTCACTTCCAGGATTACTC
CCATCCTGCGGATTGTAAGGCAAGCTTTCTAGACC
MXO02035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:08:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6171-RA | 1001 | CG6171-RA | 90..650 | 9..569 | 2775 | 99.6 | Plus |
| CG6171-RB | 947 | CG6171-RB | 90..645 | 9..564 | 2750 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15363376..15363768 | 401..9 | 1935 | 99.5 | Minus |
| 3R | 32079331 | 3R | 15363147..15363319 | 569..397 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:05 has no hits.
MXO02035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:48 Download gff for
MXO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 90..660 | 9..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:43 Download gff for
MXO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 90..660 | 9..577 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:43 Download gff for
MXO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15363137..15363315 | 401..577 | 97 | <- | Minus |
| 3R | 15363377..15363768 | 9..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:48 Download gff for
MXO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11188859..11189037 | 401..577 | 97 | <- | Minus |
| arm_3R | 11189099..11189490 | 9..400 | 99 | | Minus |
MXO02035.3prime Sequence
486 bp (477 high quality bases) assembled on 2007-01-18
> MXO02035.3prime
ATGGTCTAGAAAGCTTGCCTTACAATCCGCAGGATGGGAGTAATCCTGGA
AGTGAACTGGGTTACGGCGATAGCATGCGTTACCGAAAGGACAAGCTGGA
GTTCCGAGGGGTGGCGCTGGAAAGTTTGGTCGCCGGTAATCCTGATCCCC
CGGATGAGCTTCTGCACTACGATGAGCTGGATTTCGCCTGTAGCATCGTA
TGCCGAAGCGACAAGAAGTCCTAATACTGCTTGAAGATACGGTAGACTCG
TCGGCGGCGTCCTGTGCATTGCTATTAGTGGGCTCGGTTTTTACCATCGC
AGCTGCAGGTGAGTTTCCATTGTCCGCTGGTTCGGCTTTAATCTTGATCG
CAGGAGTAGTGCTTGTGGGCTCATCTGCATTCTCCACTGGCTCAGCTTTT
ATTTTCATAGGAACTTCAGGATTTGTTTCATCTTTAATGGACGCCACAGG
CTCCTCCGATTTTACGCGCTTTCTTAGGCTTTGCAT
MXO02035.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6171-PA | 564 | CG6171-RA | 101..561 | 479..19 | 2305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6171-RA | 1001 | CG6171-RA | 190..650 | 479..19 | 2305 | 100 | Minus |
| CG6171-RB | 947 | CG6171-RB | 190..645 | 479..24 | 2280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15363376..15363668 | 187..479 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 15363147..15363319 | 19..191 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:26 has no hits.
MXO02035.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:39 Download gff for
MXO02035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-PA | 93..564 | 18..486 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:07 Download gff for
MXO02035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 182..660 | 11..486 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:00 Download gff for
MXO02035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 182..660 | 11..486 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:00 Download gff for
MXO02035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15363377..15363676 | 188..486 | 98 | | Plus |
| 3R | 15363137..15363315 | 11..187 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:07 Download gff for
MXO02035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11188859..11189037 | 11..187 | 97 | <- | Plus |
| arm_3R | 11189099..11189398 | 188..486 | 98 | | Plus |
