MXO02039.3prime Sequence
401 bp (371 high quality bases) assembled on 2007-01-18
> MXO02039.3prime
ATGGTCTAGAAAGCTTGCAAAAGTCTTTGCCGGCACATACTTCCTTGATG
GCGCCGAGGGAGCGAATGAGGAGGTGGACTTCTGCACAAAGGAGCTCTGC
TGCTGGACCCCCTGGACCCCCTGGTTAATAGACTGCAGCTGAACAATGGG
CTGACCCTGTGGCTGGATAATGGTTGGCGCCTGAGAGTGGATGATGGTTT
GGCCAGCTTGGGAGTGCTGGGGCACAAAGCTGCCCAGGTTAAGGGAGCCA
CTCGAAACGCTGGCGATGGGAGCCACTCCCTCGTCCGAAATGTGGGTTGC
ACCTCCCAAGGCGTCGTACTGGGCCTGGATTTCCTGCTGGGCGCGCTGGG
CCTCTTCCTGGGTCTTGTACTTAATGAAGTAGACCTCCGGCTTTTGACCC
C
MXO02039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14639-PA | 1065 | CG14639-RA | 684..1062 | 397..19 | 1895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlF-RA | 1235 | CG14639-RA | 725..1103 | 397..19 | 1895 | 100 | Minus |
| TwdlV-RA | 1067 | CG14640-RA | 556..638 | 393..311 | 250 | 86.7 | Minus |
| TwdlY-RA | 1034 | CG32570-RA | 616..696 | 393..313 | 225 | 85.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4247803..4248181 | 397..19 | 1895 | 100 | Minus |
| 3R | 32079331 | 3R | 4255322..4255404 | 393..311 | 250 | 86.7 | Minus |
| X | 23542271 | X | 16735562..16735642 | 393..313 | 225 | 85.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:42 has no hits.
MXO02039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:41 Download gff for
MXO02039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14639-PA | 680..1065 | 15..401 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:38 Download gff for
MXO02039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlF-RA | 721..1106 | 15..401 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:16 Download gff for
MXO02039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlF-RA | 721..1106 | 15..401 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:16 Download gff for
MXO02039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4247799..4248187 | 14..401 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:38 Download gff for
MXO02039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 73521..73909 | 14..401 | 98 | -> | Minus |
MXO02039.5prime Sequence
736 bp (571 high quality bases) assembled on 2007-04-02
> MXO02039.5prime
CAGTCGACATGAAGCAGTTCGTTGTCCTAATGAGCCTGGTGGCCCTCACA
GCAACAGCTCCTCAGGGATACAAGTACCAACCTCAGCTGCCAGCCCTTCC
CATTGGCAATCTTCGTCCTCTGACACCCATTTCGTCAAGTGGAATATACG
CAAGTGGCGCCGTCCCATCTTTCCCACAGGCCGGTGCTCAGCCCGCGATC
GGTGTCCAGCCAGCCATTCAAGCCGTGCAGACCATCGTTGCCGCTCCTGC
TCCCGCCCCCGCTCCCGCTCCTTTGTCGATCTCACTCCCAAAGGAGACTT
TCCTTACTGCTTCGCCCCAGCATATTTTGATCAGCACTGTGCAGCAGCAG
CCTCAGCAAATCGTGTACCAGCAGTTTTTTTTTTCTCCCCCCCCAGAGCC
AGTTCGTTCAGCAAAAAAAAAAAGAGACCAAGGACATTTACATCCACTCC
GCCCCCGAGGAGAATGAGGAACTGCGGCAGGACGAGCCACTTCTGGAGAA
TGTGCCCATCCGCAAGAACTACCGGATCGTCTTCATTAAAGCGCCTTCCC
AGAATCTGAAATATACCGCCGCGGCCCTGAAGCGGGCCCAGTCAAGCAAC
GAGGAAAAGACCGTCATCTACGTGCTCTCTAAAAAGCCCGATCTCACTGA
GATCCAGCAACAGCTGAAGGTTACCCAGTCTGAGGCCAACGTTCAAAAAC
CGGAAGTCTACTTCATTAAGTATCAGACCCAGAAAG
MXO02039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14639-PA | 1065 | CG14639-RA | 1..314 | 9..322 | 1520 | 99.3 | Plus |
| CG14639-PA | 1065 | CG14639-RA | 418..713 | 427..722 | 1355 | 98.3 | Plus |
| CG14639-PA | 1065 | CG14639-RA | 320..366 | 328..374 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlF-RA | 1235 | CG14639-RA | 42..768 | 9..736 | 2985 | 94.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4247145..4247846 | 34..736 | 2865 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:06 has no hits.
MXO02039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:42 Download gff for
MXO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14639-PA | 1..366 | 9..374 | 98 | == | Plus |
| CG14639-PA | 418..727 | 427..736 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:35 Download gff for
MXO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlF-RA | 34..407 | 1..374 | 97 | == | Plus |
| TwdlF-RA | 459..768 | 427..736 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:52 Download gff for
MXO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlF-RA | 34..407 | 1..374 | 97 | == | Plus |
| TwdlF-RA | 459..768 | 427..736 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:52 Download gff for
MXO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4247144..4247485 | 33..374 | 98 | == | Plus |
| 3R | 4247537..4247846 | 427..736 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:35 Download gff for
MXO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 72866..73207 | 33..374 | 98 | == | Plus |
| arm_3R | 73259..73568 | 427..736 | 97 | | Plus |
