MXO02041.3prime Sequence
651 bp (583 high quality bases) assembled on 2007-01-18
> MXO02041.3prime
ATGGTCTAGAAAGCTTGCGTAGTACTTCCAGGAGTCGGCCGACTCCTGAT
TCTGCTTCTGCTTGCTCTTGCGCTCAATCAAACCTGCCAAATGCTCCGAC
CGCATGGACAGCGAGTCGATCTTCTCCACCAGCTGCTGATAGGGACTCAA
GGGCTGGGTGCCCATCACCACATGACCCAGTTTCGAATCGATCTTGGCAT
TCAGACGGGCATTGCGGATAAGGTTGACGATCCAGCACTCAGCCTCGTTG
GGCTTCATGTTCAGCTTATCGGCCAGCATGCTGATGGTGATGCACTGGTG
GATGCGGCAGAATGTCTCGAAGATCATCAAGCGGGCATCCTCCACGAACT
CATTCAGGCAGGCCACGATGAAGAAGTCGTTGAGGATCACCGTCTGGCAC
TCGTGCAGCTTCAGACGCGCTCCCTCGAAATCAAAGTTCACGTACAGACA
CTCCAGAAACTCGGTGATGGGATCGCGGTACGTGTACGACTCCTGTTGGA
TCACCTTGATCAAATCCTTTAGAGCATTGCGGCGGGTGCGGTTGATGACT
ACGGCGGTGGCCAAGTAACGCATGATGTGCGGACACATTGTCTGAATGGC
GTTCAAATACAGGGGATTGTACAGGAACATCTCAATAATGAGATCGCGTC
C
MXO02041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9677-PA | 1308 | Int6-RA | 673..1305 | 651..19 | 3140 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Int6-RA | 1520 | CG9677-RA | 781..1413 | 651..19 | 3150 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16785349..16785981 | 19..651 | 3150 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:45:11 has no hits.
MXO02041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:43 Download gff for
MXO02041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9677-PA | 673..1308 | 18..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:43 Download gff for
MXO02041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Int6-RA | 781..1418 | 11..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:26 Download gff for
MXO02041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Int6-RA | 781..1418 | 11..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:26 Download gff for
MXO02041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16785344..16785981 | 11..651 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:43 Download gff for
MXO02041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16778444..16779081 | 11..651 | 99 | | Plus |
MXO02041.5prime Sequence
745 bp (609 high quality bases) assembled on 2007-04-02
> MXO02041.5prime
CAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCCAGTTTTTG
GACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGCAAGGAGAT
CTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGTGAACAAGA
CGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCAATCTCAGC
CAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTCCTGGCCAC
GCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGCCACCGACA
TTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCGTCAACGCC
CTTCAGAAGGACTACAATTTTAAGGTGGATCACCTGCAGAGCGCCTACAA
GCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTCCACCTCTT
ACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGAACTACCTT
AATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTCAACTGGAA
CACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGACAACGCCC
ACTTCATCACCATCCAGGCCCTGCAGCAACGCACCTGGATGATCCACTGG
TCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTCATTATTGA
GATGTTCCTGTACAAGCCCCTGTATTTGAGCGCCATTCAGACAAT
MXO02041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9677-PA | 1308 | Int6-RA | 1..737 | 9..745 | 3535 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Int6-RA | 1520 | CG9677-RA | 108..845 | 8..745 | 3600 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16786257..16786651 | 491..97 | 1945 | 99.5 | Minus |
| 3L | 28110227 | 3L | 16785917..16786172 | 745..490 | 1220 | 98.4 | Minus |
| 3L | 28110227 | 3L | 16786744..16786834 | 98..8 | 455 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 7..48 | 212..171 | 111 | 73.8 | Minus |
MXO02041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:43 Download gff for
MXO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9677-PA | 1..737 | 9..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:09 Download gff for
MXO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Int6-RA | 98..845 | 1..745 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:41 Download gff for
MXO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Int6-RA | 98..845 | 1..745 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:41 Download gff for
MXO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16785917..16786170 | 492..745 | 98 | <- | Minus |
| 3L | 16786257..16786649 | 99..491 | 99 | <- | Minus |
| 3L | 16786744..16786838 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:09 Download gff for
MXO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16779017..16779270 | 492..745 | 98 | <- | Minus |
| arm_3L | 16779357..16779749 | 99..491 | 99 | <- | Minus |
| arm_3L | 16779844..16779938 | 1..98 | 95 | | Minus |
